BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB10FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1476 1277 0.0
>3x_Contig1476
Length = 8689
Score = 1277 bits (644), Expect = 0.0
Identities = 721/742 (97%), Gaps = 4/742 (0%)
Strand = Plus / Plus
Query: 173 gatggtatggctattggttggaactaaaatattggttcacgggcctatttttttatttct 232
|||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct: 4017 gatggtatggctattgtttggaactaaaatattggtttacgggcctatttcattatctct 4076
Query: 233 tatcttggcacaagggtgcaagattaaatttaccataagcttttgcactgctgtaagtag 292
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4077 tatcttggcacaaggttgtaagattaaatttaccataagcttttgcactgctgtaagtag 4136
Query: 293 gtacaaggacaccatcaaaagttctttaaattgtgttagtttcttcagtgctgctttcgt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4137 gtacaaggacaccatcaaaagttctttaaattgtgttagtttcttcagtgctgctttcgt 4196
Query: 353 atttcgtcaccgtatgtgacagccttaagcaatatttgaaactttccaatcaaattctaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4197 atttcgtcaccgtatgtgacagccttaagcaatatttgaaactttccaatcaaattctaa 4256
Query: 413 ggtaaaagaaaagaagaagtatttataagtagtgtggttaatcatcaacgtttttgtttt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4257 ggtaaaagaaaagaagaagtatttataagtagtgtggttaatcatcaacgtttttgtttt 4316
Query: 473 caaatagcaggagcaaaggtagcaaaagcgagggctccgatctatcgcatatccgttaaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4317 caaatagcaggagcaaaggtagcaaaagcgagggctccgatctatcgcatatccgttaaa 4376
Query: 533 gctgtctaggaccacctgattgctctttgacgttagctaagaaggttgcactttattaat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4377 gctgtctaggaccacctgattgctctttgacgttagctaagaaggttgcactttattaat 4436
Query: 593 ccggcgtggttgtatctgtacgaatttatagagcgtattaattttatcggaagggttcaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4437 ccggcgtggttgtatctgtacgaatttatagagcgtattaattttatcggaagggttcaa 4496
Query: 653 atttggaaatttgaacgttaagttgagtaaaatagctttagagattaaaagccgtgtgtc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4497 atttggaaatttgaacgttaagttgagtaaaatagctttagagattaaaagccgtgtgtc 4556
Query: 713 tgatatcagcctacttggaagttcacagtaccattttagtgaaaaaggattaacgtttgt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4557 tgatatcagcctacttggaagttcacagtaccattttagtgaaaaaggattaacg-ttgt 4615
Query: 773 tttttgaaactatacctggtgtttaaacctgnaacaggacggcgagttgaattttaattg 832
||||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||
Sbjct: 4616 tttttgaaactatacctggtgtttaaacctgaagcaagacggcgag-tgaattttaattg 4674
Query: 833 ctgtaccatctncaatactaattgattttgggaaaaaacatttgcattacccaacaaaac 892
||||||||||| ||||||||||||||||||| |||||||| ||||| || |||||||||
Sbjct: 4675 ctgtaccatctccaatactaattgattttggagaaaaacatctgcataacgcaacaaaac 4734
Query: 893 -cgcaccacaattacattcact 913
|||| ||||| ||||||||||
Sbjct: 4735 acgca-cacaaatacattcact 4755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7555
Number of Sequences: 1807
Number of extensions: 7555
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)