BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB10RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 1189 0.0
>3x_Contig1543
Length = 9648
Score = 1189 bits (600), Expect = 0.0
Identities = 740/776 (95%), Gaps = 8/776 (1%)
Strand = Plus / Minus
Query: 173 ccatgtcctaatgagttcctatgcagtgacaattccacatcgaaatccatatcatcttga 232
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 4015 ccatgtcctaatgtgttcctatccagtgacaattccagatcgaaatccatatcatcttga 3956
Query: 233 tctccatctacaagatcatatatcgaggaagacgtactacttccggtgcttcgatccaaa 292
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3955 tctcgatctagaagatcatatatcgtggaagacgtactacttccggtgcttcgatccaaa 3896
Query: 293 ggttgtaaaagaggggatctgatgagagaagcaggagtaccgaccaactcattggttaac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 ggttgtaaaagaggggatctgatgagagaagcaggagtaccgaccaactcattggttaac 3836
Query: 353 tttaaattctcaatggtcattctatcattttcttgacattgagaagaacagtataacctg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 tttaaattctcaatggtcattctatcattttcttgacattgagaagaacagtataacctg 3776
Query: 413 tcattatccaattgagcatcgcaattaccacgttcaatcaattggccacaaacggtacaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 tcattatccaattgagcatcgcaattaccacgttcaatcaattggccacaaacggtacaa 3716
Query: 473 taatcgttgaatgctgacatcgtaaactagtaggtattgcgcagacaggtatcctcggct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 taatcgttgaatgctgacatcgtaaactagtaggtattgcgcagacaggtatcctcggct 3656
Query: 533 tcactggcttgtgaaaaggttttctctttccctatctatctcgtgattacacttgaaatc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 tcactggcttgtgaaaaggttttctctttccctatctatctcgtgattacacttgaaatc 3596
Query: 593 ccctcagctactattttcaccatatacccaatatatatattgcttatatatatgtattat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 ccctcagctactattttcaccatatacccaatatatatattgcttatatatatgtattat 3536
Query: 653 ataaaaagattatggacatcgtgccttaatctcaactaaaagtgagctgagttttagcaa 712
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3535 ataaaaagattatggacatcgtgccttaatctcaactaaaggtgagctgagttttagcaa 3476
Query: 713 ttaggtaatggaattattatgaccacacacacatgcgaggatgttcaaaacgtctaaaat 772
|||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3475 ttaggtaatgaaataataatgaccacacacacatgcgagaatgttcaaaacgtctaaaat 3416
Query: 773 gttctca-ggcacacgagcacacatacaccggcagagttgggaatttttcttcgtcatt- 830
||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 3415 gttctcagggcacacgagcacacatacaccgccagagtt-ggaatttttctccgtcatta 3357
Query: 831 cacacaaattggtggcaccttgacccatgaaaccaagatcgttaaaacccagttttccta 890
|||||||| | |||||||| |||| ||||| | ||||||||| || || ||| |||||||
Sbjct: 3356 cacacaaa-tcgtggcaccatgacacatgaca-caagatcgtaaagacgcaggtttccta 3299
Query: 891 atgtttaaaccctaggccccctatcccaattgcccaggaaacgctgtcgatgacac 946
||| | | ||||||||||| | ||| ||| ||||||| | |||||||||||||||
Sbjct: 3298 gtgtct-agccctaggccccat-tccgaatcgcccagg-atcgctgtcgatgacac 3246
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6423
Number of Sequences: 1807
Number of extensions: 6423
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)