BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB11FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1590 0.0
>3x_Contig1781
Length = 20717
Score = 1590 bits (802), Expect = 0.0
Identities = 859/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Minus
Query: 97 caacgtccaagggctcatcttcgttaggaccgaagatatgtgggaaaaattctggaacta 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15707 caacgtccaagggctcatcttcgttaggaccgaagatatgtgggaaaaattctggaacta 15648
Query: 157 atctaccaagatacaagttcgcatccgtaatggtcaatgggcctcctttacggtaacatg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15647 atctaccaagatacaagttcgcatccgtaatggtcaatgggcctcctttacggtaacatg 15588
Query: 217 caggacccatattttttgtagctgattcagggcccactttgaaaagaccattgctccaaa 276
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15587 caggacccagatgcgctgtagctgattcagggcccactttgaaaagaccattgctccaaa 15528
Query: 277 ataatctggaagatccacctgcagcaactgtattgatgtctagttgtggagtttgaatca 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15527 ataatctggaagatccacctgcagcaactgtattgatgtctagttgtggagtttgaatca 15468
Query: 337 cgattccagcagtggtggtttcgaacacatgttccaagataccattaccatacctgctga 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15467 cgattccagcagtggtggtttcgaacacatgttccaagataccattaccatacctgctga 15408
Query: 397 catctgtagatgttccacccatatcaaacccgattaatgggatcttgttctctggattgt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15407 catctgtagatgttccacccatatcaaacccgattaatgggatcttgttctctggattgt 15348
Query: 457 aacatgtcgcagaatatcccaccacaccgcctgcaggtcccgagagaatggcccttaaac 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15347 aacatgtcgcagaatatcccaccacaccgcctgcaggtcccgagagaatggcccttaaac 15288
Query: 517 ctgaaaatttatgtgcatcaacaagaccaccatctgattgcataaattgaatactagtgt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15287 ctgaaaatttatgtgcatcaacaagaccaccatctgattgcataaattgaatactagtgt 15228
Query: 577 cttctgctttgtccaaacctgactcaattccttcgaggtacgattcgatcactggagtca 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15227 cttctgctttgtccaaacctgactcaattccttcgaggtacgattcgatcactggagtca 15168
Query: 637 agtaagaatcagcaacggctgaatttgccctcggaatatacttgatcataggcgataatt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15167 agtaagaatcagcaacggctgaatttgccctcggaatatacttgatcataggcgataatt 15108
Query: 697 cagaagataaggaaacatgagtgaaaccaatctctttagcgatcttataaaccttttgtt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15107 cagaagataaggaaacatgagtgaaaccaatctctttagcgatcttataaaccttttgtt 15048
Query: 757 catgttcttggtatgtatatgaatgtaaaaaggcaacggccaatgatctaatcccggtag 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047 catgttcttggtatgtatatgaatgtaaaaaggcaacggccaatgatctaatcccggtag 14988
Query: 817 catacaaaatgttcaaaagtagttcgaacttcttcttcatttattctttgcaacactcta 876
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 14987 catacaaaatgttc-aaagtagttcgaacttcttcttcattaattctttgcaacactcta 14929
Query: 877 acagtttctccagacttgcct-acacgagatcatcttctgaattcggccgagtcct-tta 934
||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |||
Sbjct: 14928 acagtttctccagacttgcctaacacgagatcatcttctgattccggccgagtcctctta 14869
Query: 935 ccctttggatctgga-cataatctgctancgtt 966
|||||||||||| || |||||||||||| ||||
Sbjct: 14868 ccctttggatcttgagcataatctgctagcgtt 14836
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5984
Number of Sequences: 1807
Number of extensions: 5984
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)