BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB12RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1088 0.0
>3x_Contig1794
Length = 36744
Score = 1088 bits (549), Expect = 0.0
Identities = 692/733 (94%), Gaps = 5/733 (0%)
Strand = Plus / Minus
Query: 153 atatagtcctgaaggcaaattgctgtctcaatagaattaccacggatcatatacaacata 212
|||||||||||| || |||||||||||||||| | ||| | |||||||||||||||||
Sbjct: 22563 atatagtcctgatgggaaattgctgtctcaattggatt-ctttggatcatatacaacata 22505
Query: 213 tgctagcatttcagagtaatcgttcagaacaagaactggaaatctctgacaaccaactta 272
|||| | |||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 22504 tgcttgaatttgagagtaatc-ttc-gaacaagaactggaaatctctgacaaccaactta 22447
Query: 273 tttgtattccttctttcaactatgtgatcctgagattcccagatgtattttactttgctt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22446 tttgtattccttctttcaactatgtgatcctgagattcccagatgtattttactttgctt 22387
Query: 333 ggcttaacagtatcagcctgaactgtcttatttaaccaccaagtactttgctttgagaac 392
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 22386 ggtttaacagtatcagcctgaactgtcttagttaaccaccaagtactttgctttgagaac 22327
Query: 393 tctaattctggaatagtacctggttcaaatttcgccgtagttgtccgtcttaatggctgg 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22326 tctaattctggaatagtacctggttcaaatttcgccgtagttgtccgtcttaatggctgg 22267
Query: 453 aaactggccggaatttgtggagcagcagatgaaggagtggctggtgatgagtttgctgca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22266 aaactggccggaatttgtggagcagcagatgaaggagtggctggtgatgagtttgctgca 22207
Query: 513 cctggaatagtctgaattgaaggtcttcgttgcgatgcattagaaggaggcaatggtgga 572
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22206 cctggaatagtctgaattgaaggtcttcgttgcggtgcattagaaggaggcaatggtgga 22147
Query: 573 gggccgccactgcttggtactggaggagcatgggcagcagcgggctgttttgttggcagt 632
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 22146 gggccgccactgcttggtactggaggagcaggggcagcagcgggctgttttgttggcagt 22087
Query: 633 ttctgctcagtgttttcggttttaacgcttaaaactggagctggagcctttgttggtaat 692
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 22086 ttctgctcagtgttttcggttttaacgcttaaaactggtgctggagcctttgttggtaat 22027
Query: 693 ggtggtacatgtacgcttgaaagaacagagagatttggtgcacctgttggaatttggcgg 752
||||||||| ||||||||||| |||||| || |||||||||||||||||||| | ||
Sbjct: 22026 ggtggtacaggtacgcttgaaggaacaggaggaattggtgcacctgttggaattggcggg 21967
Query: 753 acggaaagagcatattgtatttgaagggctgcgggcaatttttgtggggcgttagtagct 812
|||||| ||||| || | ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 21966 acggaaggagcagatggaattggaggggctgcgggcaatttttgtggggcgttagtagct 21907
Query: 813 tgtggagtttgtggaatttgt-gggatcccgggaaagt-ttaattggattaacatgagtg 870
||||||||||||||| ||||| |||||||||| |||| | ||||| || ||||||||||
Sbjct: 21906 tgtggagtttgtggagtttgtggggatcccggagaagtatcaattgtataaacatgagtg 21847
Query: 871 ggcctaattcttt 883
|||||||||||||
Sbjct: 21846 ggcctaattcttt 21834
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6503
Number of Sequences: 1807
Number of extensions: 6503
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)