BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC01FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1503 0.0
>3x_Contig1765
Length = 24733
Score = 1503 bits (758), Expect = 0.0
Identities = 811/827 (98%), Gaps = 2/827 (0%)
Strand = Plus / Minus
Query: 89 agaaaaatagttcaggatctaattataccaacactagcatcaagtgctgtgcacaaacca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23852 agaaaaatagttcaggatctaattataccaacactagcatcaagtgctgtgcacaaacca 23793
Query: 149 atgtttactgatcagctagtctaaattttcccacacatgacacgaagtgtgaccttcatg 208
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 23792 atgtttactgatcagctagtcgaaattttcccacacatgacacgaagtgtgaccttcatg 23733
Query: 209 gatcgtgatttttatcttacatcattaagggagagtgtcgttcagttattcacctgccca 268
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23732 gatcgtgaacctcaacttacatcattaagggagagtgtcgttcagttattcacctgccca 23673
Query: 269 actacggcttacagtatttttcacagtggacatttcaactacgtcatatggtcagtgatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23672 actacggcttacagtatttttcacagtggacatttcaactacgtcatatggtcagtgatt 23613
Query: 329 gacgtttttgttgacttttctaccatggatgagggcacgttggtttggcaacgggttcag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23612 gacgtttttgttgacttttctaccatggatgagggcacgttggtttggcaacgggttcag 23553
Query: 389 agaagtaacccttctaaaagctacagtatatcattcaaacaaggattgtatgctgtagaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23552 agaagtaacccttctaaaagctacagtatatcattcaaacaaggattgtatgctgtagaa 23493
Query: 449 actttactcagtaaaatcactgaccctaatctattgttgaaaccgggagagtttatcatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23492 actttactcagtaaaatcactgaccctaatctattgttgaaaccgggagagtttatcatg 23433
Query: 509 attgtaacactatgtaaactcttcaacggcgcatggaagattaaaagaaaggaaggagag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23432 attgtaacactatgtaaactcttcaacggcgcatggaagattaaaagaaaggaaggagag 23373
Query: 569 catgttttaagggaagaccagcattttattccatatttggagtatacgacatcagtctat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23372 catgttttaagggaagaccagcattttattccatatttggagtatacgacatcagtctat 23313
Query: 629 agcatcattcagacttttgataaagttttgcagcaatcaaaggatcacattgaccagcga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23312 agcatcattcagacttttgataaagttttgcagcaatcaaaggatcacattgaccagcga 23253
Query: 689 ttgcttattggggccatcaacttattggattcatttttgggacatagaaacttgtcatac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23252 ttgcttattggggccatcaacttattggattcatttttgggacatagaaacttgtcatac 23193
Query: 749 anattatacaaagactttgaaatcataaaattccaaatcagcaaagaacgagtttcattt 808
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23192 aaattatacaaagactttgaaatcataaaattccaaatcagcaaagaacgagtttcattt 23133
Query: 809 atgaatcnccgtcatactttgttttctttccttgngcagcatgtttcccttacagttgtc 868
||||||| | ||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 23132 atgaatcccgttcatactttgttttctttccttgtgcagcatg-ttcccttacaggtgtc 23074
Query: 869 aattcaagttttatctcaatcc-aagactatctatttattccggatt 914
|||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 23073 aattcaagttttatctcaatccaaagactatctagttatttcggatt 23027
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5986
Number of Sequences: 1807
Number of extensions: 5986
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)