BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC01RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1112 0.0
>3x_Contig1794
Length = 36744
Score = 1112 bits (561), Expect = 0.0
Identities = 625/645 (96%), Gaps = 1/645 (0%)
Strand = Plus / Minus
Query: 48 cttcctacgtgtgccatttgcgaaagcagtgacgggtttcaagttcgaatcgggacgaag 107
|||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 31337 cttcttacgtgttccatttgcaaaagcagtgacgggtttcaagttcgaatcgggacgaag 31278
Query: 108 agttaaacctaaggtcaccggcgttgttgtcgagaatgaatacgtcgacgcattggttgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31277 agttaaacctaaggtcaccggcgttgttgtcgagaatgaatacgtcgacgcattggttgc 31218
Query: 168 tgtaatagaaaatatcgaagaatgtaacgatgatgcagctagacatgaattagatcttga 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 31217 tgtaatagaaaatatcgaagaatgtaacgatgatgcagctagacatgaattagagcttga 31158
Query: 228 ggctttgaacggctggtcactccttcttaccaaactcaggatcaaaagtagattggttga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31157 ggctttgaacggctggtcactccttcttaccaaactcaggatcaaaagtagattggttga 31098
Query: 288 agaacatggtgcggtggcagatgaagacggcagagattactctggtgaaagagatagcga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31097 agaacatggtgcggtggcagatgaagacggcagagattactctggtgaaagagatagcga 31038
Query: 348 tctagaagatcacgaatcatatacgggagaagacacagaaatgggcggtttcgaacaagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31037 tctagaagatcacgaatcatatacgggagaagacacagaaatgggcggtttcgaacaagg 30978
Query: 408 tgggttccttcttgattctaatatggatggtggattcgtgcctgaaccagaattacaaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30977 tgggttccttcttgattctaatatggatggtggattcgtgcctgaaccagaattacaaca 30918
Query: 468 tgcagaatctgaaacagaacaagttgaacatccacctgtgacctatggtgaagcaactct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30917 tgcagaatctgaaacagaacaagttgaacatccacctgtgacctatggtgaagcaactct 30858
Query: 528 agaccgcgcctgaccaagtaacacggagccaaacgaaatcgctgatgagtttcgacagtt 587
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 30857 agaccgcgctgaaccaagtaacacggagccaaacgaaatcgctgatgagttcgaacagtt 30798
Query: 588 cttgccatgagttggatcgcattccgatgacgatgattcatttcattttg-atcagaata 646
||||| | |||||||||||| || |||||||||||||||||||| | || |||||||||
Sbjct: 30797 cttgcaagaagttggatcgcaatcggatgacgatgattcatttcaatatgaatcagaata 30738
Query: 647 aatttcaagatcacgtgaactattagtggagcgtatctaatgact 691
||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 30737 aatctcaagatcacgtgaactattagtgtagcgtatctaatgact 30693
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6698
Number of Sequences: 1807
Number of extensions: 6698
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)