BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1300 0.0
>3x_Contig1683
Length = 16378
Score = 1300 bits (656), Expect = 0.0
Identities = 734/755 (97%), Gaps = 4/755 (0%)
Strand = Plus / Plus
Query: 92 caatgtcctattctctgtgccagaattccacaattgatcaagaattacaaaaggaagagt 151
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5718 caatgtcctatt-tctgtgccagaattccacaattgatcaagaattacaaaaggaagagt 5776
Query: 152 actgatgggctttcacccctcctctttataagtacgttaattgcaaatgtcacatacaca 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 actgatgggctttcacccctcctctttataagtacgttaattgcaaatgtcacatacaca 5836
Query: 212 ctatccattttcaccagttgctcttatctcacagatgaagacaagctaggtttcgtactc 271
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5837 ctatccattttcaccagttgctcttatctcacagatgaggacaagctaggtttcgtactc 5896
Query: 272 aatgcattaccatttatcgtggggagcgcatgcactgtagtgttcgatttgatctacttc 331
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5897 aatgcattaccatttatcgtggggagcgcaggcactgtagtgttcgatttgatctacttc 5956
Query: 332 taccaacactacgttttgtacgcggaagactacaacattagaagacttgaatctgacgag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5957 taccaacactacgttttgtacgcggaagactacaacattagaagacttgaatctgacgag 6016
Query: 392 ttcactccattgatgaatgacggaacggtttcccccctatcaaccaattcctattaacaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6017 ttcactccattgatgaatgacggaacggtttcccccctatcaaccaattcctattaacaa 6076
Query: 452 tttctgtgttcttccccacaccaatgtgcacatatacgtatatattcacagaataattat 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6077 tttctgtgttcttccccacaccaatgtgcacatatacgtatatattcacagaataattat 6136
Query: 512 atgtaatcatttctcgagcttgaaacttcgaaaacaccggcactactgaccggtttctca 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6137 atgtaatcatttctcgagcttgaaacttcgaaaacaccggcactactgaccggtttctca 6196
Query: 572 atgccctgctttgaatatgggaccgatcatgtcatttgtcatggagcacaccagtccgtg 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6197 atgccctgctttgaatatgggaccgatcatgtcatttgtcatggagcacaccagtccgtg 6256
Query: 632 gcacagcgtgactactccatgcccctggactgaaccactgcctttttaacaacgggatta 691
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct: 6257 gcacagcgtgactactccatgcccctggactgaaccactgccttttcaacaacggaataa 6316
Query: 692 caccgtggtataagaaggcgaaaagtatcggaaaatattgacaccgggacttacgttcaa 751
||||||| |||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 6317 caccgtgtaataagagggcgaaaagtatcgtaaaatatcgacaccgggacttacgttcaa 6376
Query: 752 gagcatcggataaatgaaggaacaaccgttactcacataacattaattg-tgctactggg 810
||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||| |
Sbjct: 6377 gagcatcggataaatgagggaacaaccgttactcacataacaattattgttgctact-gt 6435
Query: 811 gcctcctnctgtgttgcctttttttttcttttact 845
| || || |||||||||| ||||||||||||||||
Sbjct: 6436 gtcttcttctgtgttgcc-ttttttttcttttact 6469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6636
Number of Sequences: 1807
Number of extensions: 6636
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)