BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC03FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 1562 0.0
>3x_Contig1726
Length = 20144
Score = 1562 bits (788), Expect = 0.0
Identities = 828/837 (98%), Gaps = 4/837 (0%)
Strand = Plus / Minus
Query: 87 caatacttgcagcccatgttcaaaaagtaccaagaggtattgattagcatgctcagtacg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11389 caatacttgcagcccatgttcaaaaagtaccaagaggtattgattagcatgctcagtacg 11330
Query: 147 ctctatatcatgcgtaattataccaataacatcgaaaatttgatggtcaaattttagcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11329 ctctatatcatgcgtaattataccaataacatcgaaaatttgatggtcaaattttagcac 11270
Query: 207 cacgtttaatttttattccgtcctgcgaatcggtaactcttcagctatatcatcattttt 266
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11269 cacgtttaatttcaattccgtcctgcgaatcggtaactcttcagctatatcatcattttt 11210
Query: 267 cataaactgcaagaagcctttttgtttggagattgtataaccgttctgtataaccttatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11209 cataaactgcaagaagcctttttgtttggagattgtataaccgttctgtataaccttatg 11150
Query: 327 attttccttagcagaaaaaactgtcaatacctcatcatccatatcatcatcaagagctct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11149 attttccttagcagaaaaaactgtcaatacctcatcatccatatcatcatcaagagctct 11090
Query: 387 atgaagtaaagaatcatctgacggcaagtttaacggtatgccatattctttgaacacgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11089 atgaagtaaagaatcatctgacggcaagtttaacggtatgccatattctttgaacacgct 11030
Query: 447 attttcagatgttttggtgtataattcgtaaaccaacagaaagttgttcttggttataac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11029 attttcagatgttttggtgtataattcgtaaaccaacagaaagttgttcttggttataac 10970
Query: 507 atagtagaaccgcttatcatctattactggatcgcaaaattggcctgtaaggaaaccctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10969 atagtagaaccgcttatcatctattactggatcgcaaaattggcctgtaaggaaaccctt 10910
Query: 567 tacctcagtgccaagaggtaaattatctctaataccaaaattgacaccaaacagttcaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10909 tacctcagtgccaagaggtaaattatctctaataccaaaattgacaccaaacagttcaat 10850
Query: 627 agactcagcagtacgttcgtgacatgctaatggagcaaagggtttggcttggtaaacaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10849 agactcagcagtacgttcgtgacatgctaatggagcaaagggtttggcttggtaaacaaa 10790
Query: 687 aagtcttgtctttgtaataaaaaggaagtggtttgaattaggtgcctcaattgtttgaat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10789 aagtcttgtctttgtaataaaaaggaagtggtttgaattaggtgcctcaattgtttgaat 10730
Query: 747 gatatcctcatcgataccctctatacaacgtccggggaanttgaaatgattgcggtggtt 806
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 10729 gatatcctcatcgataccctctatacaacgtcc-gggaagttgaaatgattgcggtgg-t 10672
Query: 807 tttactgggagcatcatcgtctataagtcttctgtttagcctcaattgccccttaccttc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10671 tttactgggagcatcatcgtctataagtcttctgtttagcctcaattgccccttaccttc 10612
Query: 867 atgtnctgtttatccttcaacataaa-aatgaaaaactgtanatcatgatgtttttt 922
|||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 10611 atgtcctgtttatccttcaacataaagaatg-aaaactgtagatcatgatgtttttt 10556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6863
Number of Sequences: 1807
Number of extensions: 6863
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)