BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZC03RM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1629                                                        1063   0.0  

>3x_Contig1629 
          Length = 12481

 Score = 1063 bits (536), Expect = 0.0
 Identities = 570/576 (98%), Gaps = 4/576 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   tccaacaaagacccac-gaggtttgagaaaggttgcttgtatcggtgcttggcatccagc 107
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9610 tccaagaaagacccacagaggtttgagaaaggttgcttgtatcggtgcttggcatccagc 9551

                                                                        
Query: 108  ccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctctat 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9550 ccacgttatgtggtccgttgctagagctggtcaaagaggttaccaccacagaacctctat 9491

                                                                        
Query: 168  taaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccgaatt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9490 taaccacaaggtctacagagttggtaagggtgacgacgaagctaacgccgctaccgaatt 9431

                                                                        
Query: 228  cgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctatcaa 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9430 cgacagaaccaagaagaccatcaccccaatgggtggtttcgtccactacggtgctatcaa 9371

                                                                        
Query: 288  caatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttacttt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9370 caatgatttcgttatcttgaagggttctatcccaggtaccagaaagagagttgttacttt 9311

                                                                        
Query: 348  aagaaagtccttgtacaccaacacctccagaaaggccttggaagaagttaccttgaagtg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9310 aagaaagtccttgtacaccaacacctccagaaaggccttggaagaagttaccttgaagtg 9251

                                                                        
Query: 408  gatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagcacgc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9250 gatcgacactgcttctaagttcggtaagggtagattccaaaccccagctgaaaagcacgc 9191

                                                                        
Query: 468  tttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaattga 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9190 tttcttgggtactttgaagaaggacttataaactcctcaactctaatagagtcgaattga 9131

                                                                        
Query: 528  gtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaag-aagtgtt 586
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9130 gtaaaaagctttgcatgctgtaattttatagactagttttggagtactcaagaaagtgtt 9071

                                                
Query: 587  tacactttcttt-actat-tcatcggctggttcata 620
            |||||||||||| |||||  ||||||||||||||||
Sbjct: 9070 tacactttctttcactatcccatcggctggttcata 9035


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8288
Number of Sequences: 1807
Number of extensions: 8288
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)