BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC04RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 1037 0.0
>3x_Contig1490
Length = 9411
Score = 1037 bits (523), Expect = 0.0
Identities = 590/603 (97%), Gaps = 7/603 (1%)
Strand = Plus / Plus
Query: 51 acaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaatttgcgg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 acaaggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaatttgcgg 3576
Query: 111 ataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgaccaaga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 ataatgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgaccaaga 3636
Query: 171 atggttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgagattt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 atggttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgagattt 3696
Query: 231 tgaacccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtcaatg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 tgaacccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtcaatg 3756
Query: 291 tagaagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttcatcag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 tagaagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttcatcag 3816
Query: 351 aaattggtgatgaagacatggatttggacttggacgacgatgacgacttagacctagact 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 aaattggtgatgaagacatggatttggacttggacgacgatgacgacttagacctagact 3876
Query: 411 gatctaaaatgaattacaaaaagataacatacaaacaaactcactcagtaataaaatttc 470
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3877 gatctaaaatgaattacaaaaagaaaacatacaaacaaactcactcagtaataaaatttc 3936
Query: 471 agttcaacagtaccatcatatatagtgtaaagtacatattttttttcactttctttagta 530
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3937 agttcaacagtaccatcatatatagtgtaaagtacata-tttttttcactttctttagta 3995
Query: 531 taatatttttgacttttacatgttttccatgttcataagaagtgcaaaaccaatggggct 590
||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| |||
Sbjct: 3996 taata-ttttgacttttacatgtttt-catgttcataagaggtgc-aaaccaatggtgct 4052
Query: 591 ggctgttattcatacaagccgtcctaactaagcattctggctgaagttggaattacatgt 650
||||||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||
Sbjct: 4053 -gctgttattcatacaag-cgtactaactaagcattctggctg-agtttgtattacatgt 4109
Query: 651 tac 653
|||
Sbjct: 4110 tac 4112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9813
Number of Sequences: 1807
Number of extensions: 9813
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)