BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 1598 0.0
>3x_Contig1479
Length = 7316
Score = 1598 bits (806), Expect = 0.0
Identities = 844/853 (98%), Gaps = 3/853 (0%)
Strand = Plus / Minus
Query: 85 acaagcagcaagtccaacaacgttacgctcaacaaccacaaccaacgcaacagaaagctc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 acaagcagcaagtccaacaacgttacgctcaacaaccacaaccaacgcaacagaaagctc 4076
Query: 145 aaaagtcaccaaacaatgatacttcacaacaacaattctcacaaaatcgtcaacaacaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 aaaagtcaccaaacaatgatacttcacaacaacaattctcacaaaatcgtcaacaacaac 4016
Query: 205 cacagtatcaattttaacagaatcaaccacaaaacggtaaagtccaagtggcagattcca 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 cacagtatcaatttcaacagaatcaaccacaaaacggtaaagtccaagtggcagattcca 3956
Query: 265 attcagaaaagggatttttcagcaagcttggctgttgttagcatttcttttgttacctac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 attcagaaaagggatttttcagcaagcttggctgttgttagcatttcttttgttacctac 3896
Query: 325 cactctttgccatagttgacaagaatcaatcagaaaaacaacaacaacaacaacaacagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 cactctttgccatagttgacaagaatcaatcagaaaaacaacaacaacaacaacaacagt 3836
Query: 385 ctaagagaccacgtcgaataaatgccattattatcctttcatcccaaccctcattaatgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 ctaagagaccacgtcgaataaatgccattattatcctttcatcccaaccctcattaatgt 3776
Query: 445 caaatcaaaaaaagatgaaacacctttttattttttgtgtttatgtatgtctctgtgttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 caaatcaaaaaaagatgaaacacctttttattttttgtgtttatgtatgtctctgtgttg 3716
Query: 505 atcgaaggaaagaaggatcattttgcacttctttgaaagatgttccaaccattgttttag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 atcgaaggaaagaaggatcattttgcacttctttgaaagatgttccaaccattgttttag 3656
Query: 565 gttttacctcatacattcaaacatgttataaagttggaatataccatgaattcaatcgaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 gttttacctcatacattcaaacatgttataaagttggaatataccatgaattcaatcgaa 3596
Query: 625 tatatcatgaactatgagaaaatccaaacggtatgaaaacaaatttgatcttttatcaga 684
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 tatatcacgaactatgagaaaatccaaacggtatgaaaacaaatttgatcttttatcaga 3536
Query: 685 atgctgatactcactatcagttaataatcctctttnttttccttttacctatttctgttc 744
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3535 atgctgatactcactatcagttaataatcctcttttttttccttttacctatttctgttc 3476
Query: 745 ttatcgacagtcattttgtcctcatatttgccttgctgatatgcccaataggttttggct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 ttatcgacagtcattttgtcctcatatttgccttgctgatatgcccaataggttttggct 3416
Query: 805 gcatgtaagttgacgttcataacagagcactggtaaagataatgtagatccataaaagaa 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3415 gcatgtaagttgacgttcataacagagcactggtaaagataatgtagatccataaaag-a 3357
Query: 865 cgtcccatctgaatatgt-aactatagtaaaattaaa-taaactcttgtaagatttagtt 922
||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct: 3356 cgttccatctgaatatgtaaactatagtaaaattaaattaaactcttgtaagatttaagt 3297
Query: 923 ttgaggtatgacc 935
|||||||||||||
Sbjct: 3296 ttgaggtatgacc 3284
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9608
Number of Sequences: 1807
Number of extensions: 9608
Number of successful extensions: 533
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)