BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC05RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig652 1162 0.0
>3x_Contig652
Length = 2532
Score = 1162 bits (586), Expect = 0.0
Identities = 661/678 (97%), Gaps = 6/678 (0%)
Strand = Plus / Minus
Query: 48 tgatagcgatttatctgttttgttctcaagaatcttactgaataactgatgttgaattac 107
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tgatagcgatttatctgttaggttctcaagaatcttactgaataactgatgttgaattac 1768
Query: 108 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 ctcctcttccaaaagattctttggacatttcacaacaatacaattagagatatacttgag 1708
Query: 168 ggtttccttgtctggacataaattgatagtcttggttataacatcagaggttatgtattt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 ggtttccttgtctggacataaattgatagtcttggttataacatcagaggttatgtattt 1648
Query: 228 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ctggtgaatcaattcggagaaagtatcataatcaaatttgtagccatcttcggaaagtct 1588
Query: 288 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ttcatattgcttgaaccctgtccttttggagttacgcaataccggacccaagcttaatgg 1528
Query: 348 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 gtaagatttgtcccagtcaccagggtgttggaaataagccacagtatcttcggaaagatc 1468
Query: 408 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 gaccattttcatagcttgaattgctacaggggaaatcttgttggcatccaaatgaattcg 1408
Query: 468 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaac-a 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1407 tttgtagttaacgcaaagcttttggaatctttcagccatttgttttttgaaatctaacaa 1348
Query: 527 catctca-tttggatatcc-aatagtaggtatctagatcatataatctcgaaacagctat 584
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 catctcattttgaatatccaaatagtaggtatctagatcatataatctcgaaacagctat 1288
Query: 585 ttcatgcatttcaagattgtaagatttatcctgaatcaattganggagtttttcacaacg 644
| |||||| ||||||||||||||| | |||||||||||||||| |||||||| |||||||
Sbjct: 1287 tccatgcaattcaagattgtaagaataatcctgaatcaattga-ggagttttccacaacg 1229
Query: 645 tttggaaacaaac-atgaaacctgcgtta-taactgcagaagcggtttcaagagtgaacg 702
||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct: 1228 tttggaaacaaacaatgaaacctgcgtaattaactgcagaagcgttttcaagagtgaacg 1169
Query: 703 cttaacaggcactcttaa 720
||| ||||||||||||||
Sbjct: 1168 cttcacaggcactcttaa 1151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7242
Number of Sequences: 1807
Number of extensions: 7242
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)