BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC06FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig531 1499 0.0
>3x_Contig531
Length = 2671
Score = 1499 bits (756), Expect = 0.0
Identities = 818/834 (98%), Gaps = 4/834 (0%)
Strand = Plus / Minus
Query: 89 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 1520
Query: 149 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 1460
Query: 209 tctatcgattata-gttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 267
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 tctatcgattcaatgttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 1400
Query: 268 tcgtatatgtcg-ggatatttttctctgatgattctttctatcacatgcaaaaaggataa 326
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 tcgtatatgtcgaggatatttttctctgatgattctttctatcacatgcaaaaaggataa 1340
Query: 327 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 1280
Query: 387 ctgcgttttcttgttgttcataaagtttccgatctctacgacaatgtagaaaaattgttt 446
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1279 ctgcgttttcttgttgtccataaaaattccgatctctacgacaatgtagaaaaattgttt 1220
Query: 447 gagtctattcgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 506
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 gagtctatacgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 1160
Query: 507 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 1100
Query: 567 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttccaattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttccaattt 1040
Query: 627 actgacg-tcttccttcggagccttaccggttttccaatctgacgcatagggttcgaaag 685
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 actgacgttcttctttcggagccttaccggttttccaatctgacgcatagggttcgaaag 980
Query: 686 atctaattatactttgggggatagtttcgaagtcatccttgttaaagaactcaagaacgc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 atctaattatactttgggggatagtttcgaagtcatccttgttaaagaactcaagaacgc 920
Query: 746 tatgattcttgattatatcatcgtcacaccttagtacttttatcaaaaggtcttcaacag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tatgattcttgattatatcatcgtcacaccttagtacttttatcaaaaggtcttcaacag 860
Query: 806 aatatgaagaanacatatgtaggttgattccaaattgttgagccagatcccttgtacaaa 865
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 859 aatatgaagaaaacatatgtaggttgattccaaattgttgagccagatcccttgacaaaa 800
Query: 866 ga-aaactttttcgttcttcttactagctgtnacgttggatttcttcttcattc 918
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 799 gagaaactttttcgttcttcttactagctgtaacgttggatttcttcttcattc 746
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7681
Number of Sequences: 1807
Number of extensions: 7681
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)