BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC06RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1207 0.0
>3x_Contig1617
Length = 15119
Score = 1207 bits (609), Expect = 0.0
Identities = 744/777 (95%), Gaps = 10/777 (1%)
Strand = Plus / Plus
Query: 48 attatacttgtattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 attatacttgtattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 3084
Query: 108 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 3144
Query: 168 gtaatcagaatgaccaaaatggaaaacaaccgaacgctcaagtgaagaaggaagtcaagg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 gtaatcagaatgaccaaaatggaaaacaaccgaacgctcaagtgaagaaggaagtcaagg 3204
Query: 228 tcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaagtataaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3205 tcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaaggataaga 3264
Query: 288 aggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatcttaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 aggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatcttaa 3324
Query: 348 aatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagcgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 aatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagcgg 3384
Query: 408 aaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttacatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 aaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttacatt 3444
Query: 468 attttacagatgatttcgtgaagaaatctatactagcgattttaaaagtacataattcat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 attttacagatgatttcgtgaagaaatctatactagcgattttaaaagtacataattcat 3504
Query: 528 taaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttagantattta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3505 taaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttagataattta 3564
Query: 588 ttataaaactgattcaacgattttagccgaaaaactga-ggtctcgaacatatactncgn 646
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct: 3565 ttataaaactgattcaacgattttag-cggaaaactgagggtctcgaacatatactcggg 3623
Query: 647 gagctgatcttgtaaactg-ttcaattc-tgtactgacctttgttncaacaacggtacgt 704
||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct: 3624 gagctgatcttgt-aactgtttcaattcttgtactgacctttgtttcaacaacggtacgt 3682
Query: 705 aaac-attttcgtttcatcgttctt-cccttcacg-atccttaactggaatccattatcc 761
|||| || | ||| ||||||| ||| ||||||||| ||||| | || ||||||||||||
Sbjct: 3683 aaacaatctccgtctcatcgtccttccccttcacgaatcctaacttgtaatccattatcc 3742
Query: 762 aattc-tggtcccctgactggtttcaaaccaaagccc-aaatcatccccatatgtct 816
|||| || |||| |||||||| |||||||| ||||| | ||||||| |||||||||
Sbjct: 3743 cattcttgttcccttgactggtatcaaaccacagccctagatcatcctcatatgtct 3799
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8432
Number of Sequences: 1807
Number of extensions: 8432
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)