BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC07FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig584 809 0.0
3x_Contig1176 577 e-164
>3x_Contig584
Length = 3317
Score = 809 bits (408), Expect = 0.0
Identities = 450/461 (97%), Gaps = 3/461 (0%)
Strand = Plus / Plus
Query: 453 aacgaatatgcgagtttattccaggtttccaatagtaagataacccaccataacctttta 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacgaatatgcgagtttattccaggtttccaatagtaagataacccaccataacctttta 60
Query: 513 cgaaggttcttttcatctttgggtatattccaatccgcacaatcaatatgaagtcccata 572
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaggttcttttcatctttgggtattttccaatccgcacaatcaatatgaagtcccata 120
Query: 573 atgtacgctgtattgattatagagctgaggaaattagcctcaaaaggggtacgatagcct 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtacgctgtattgattatagagctgaggaaattagcctcaaaaggggtacgatagcct 180
Query: 633 gtgttcttgaaacttataatatggtagaaaataatcatgcatttaagtgttgttagagtt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgttcttgaaacttataatatggtagaaaataatcatgcatttaagtgttgttagagtt 240
Query: 693 ggggcaatcaattccctattgatttgattccagacgactgtaaagaattcttctncgaaa 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 ggggcaatcaattccctattgatttgattccagacgactgtaaagaattcttctccgaaa 300
Query: 753 atgaattgtaagtcgttccccttcataatatccaaacccttcatcgttatcgatgtatcg 812
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 atgaattgtaagtcgttccccttcataatatccaaacccttcatcggtatcgatgtatcg 360
Query: 813 tagtaaaaccatctatatagtc-agcggtataacaacagttacagcatggggtctgaaaa 871
||||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 361 tagtaaaaccatctata-agtcaagcggtataacaacagtaacagcaatgggtctgaaaa 419
Query: 872 ctcaccgnaatcacgctctgtatccgatgncatctgatgag 912
||||||| |||||||||||| |||||||| |||||||||||
Sbjct: 420 ctcaccgtaatcacgctctg-atccgatgtcatctgatgag 459
>3x_Contig1176
Length = 5769
Score = 577 bits (291), Expect = e-164
Identities = 320/327 (97%), Gaps = 2/327 (0%)
Strand = Plus / Plus
Query: 87 tatattgcaagtcatcggctatcagtttgaattttaacctcaatataagaatcttggaaa 146
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5444 tatattgcaagtcatcggctatcactttgaattttaacctcaatataagaatcttggaaa 5503
Query: 147 cgacatagcaaagcgtaatgctactataagatacatttgcgtctaacggcaatgtagaat 206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 cgacatatcaaagcgtaatgctactataagatacatttgcgtctaacggcaatgtagaat 5563
Query: 207 attcgttaaactcatccattcaacaaatcatcgtaatgggaaatcttaggatcattcata 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 attcgttaaac-catccattcaacaaatcatcgtaatgggaaatcttaggatcattcata 5622
Query: 267 gatatttcgccttggaaaagagttttcaccaggttgcaagtagtacatgtcaagttcacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5623 gatatttcgccttggaaaagagttttcaccaggttgcaagtagtacatgtcaagttcacg 5682
Query: 327 aataaataaaaggagtacacggt-ggaagttgggaaaaaatcatcaatgtcatcgaacat 385
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 5683 aataaataaaaggagtacacggtcggaaggtgggaaaaaatcatcaatgtcatcgaacat 5742
Query: 386 gctaaaacagtccactgaagaaagtcc 412
||||| ||||||||||| |||||||||
Sbjct: 5743 gctaacacagtccactgtagaaagtcc 5769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5739
Number of Sequences: 1807
Number of extensions: 5739
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)