BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC07RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 918 0.0
3x_Contig540 159 1e-38
3x_Contig1709 155 2e-37
3x_Contig1088 151 3e-36
3x_Contig1769 149 1e-35
3x_Contig1787 147 5e-35
3x_Contig1464 135 2e-31
3x_Contig1605 127 4e-29
3x_Contig1803 119 1e-26
3x_Contig1648 101 3e-21
>3x_Contig661
Length = 2026
Score = 918 bits (463), Expect = 0.0
Identities = 572/595 (96%), Gaps = 10/595 (1%)
Strand = Plus / Minus
Query: 52 ctttatatctcgctgtcacacgagttgttattcttcttggaataactaaacaacagactg 111
|||||||| |||||||||||||||||||| ||| ||||||| | |||||||||||||||
Sbjct: 606 ctttatat-tcgctgtcacacgagttgtttttcgtcttggattttctaaacaacagactg 548
Query: 112 cttcgatatctgtattccctatcaaa-cacttcgtaagtacttcctccaaatatctctct 170
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 547 cttcgatatctgtattccctatcaaaacact-cgtaagtacttcctccaaatatctctct 489
Query: 171 ctcgggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttatg 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 488 ctcgggatctaagtctgagtatgggttaacatttttatcctcttttaaactctgtttagg 429
Query: 231 agcactaccatcactaacgatatcgagtctttgtatatcttcacagatacctctt-gtcg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 agcactaccatcactaacgatatcgagtctttgtatatcttcacagatacctctttgtcg 369
Query: 290 gat-cattacttccttgcggagactcagtgacgctgccat-gtaggtgatcctggttgtc 347
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 368 gattcattacttccttgcggagactcagtgacgctgccattgtaggtgatcctggttgtc 309
Query: 348 gcagtcacagtcacgtgtaatt-aattcaaaaccttcggtatcagatgaatccatagtgt 406
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 308 gcagtcacagtcacgtgtaatttaattcaaaac-ttcggtatcagatgaatccatagtgt 250
Query: 407 ttactagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttactagctatatatagctagtgtgttgatgcacctggcgatctgtcatgactgtgttga 190
Query: 467 tggtctttccccagatctatggcctctttatataataactcagattgg-ttaatgatgtt 525
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 189 tggtctttccccagatctatggcctctttatataataactcagattggtttaatgatgtt 130
Query: 526 tcatgttgatacttgaccgtctattggttctaatccggct-aacagataacccgccgaat 584
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 129 tcatgttgatacttgaccgtctattgtttctaatccgtctcaacagataacccgccgaat 70
Query: 585 gatctaaaaaatctgtaaaaattgaattaaatttcgggcctccttagcttagtgg 639
|||||||||||||||||||| ||| | || |||||| ||||||||||||||||||
Sbjct: 69 gatctaaaaaatctgtaaaatttgtaatagatttcgtgcctccttagcttagtgg 15
>3x_Contig540
Length = 1644
Score = 159 bits (80), Expect = 1e-38
Identities = 156/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| ||| ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1119 cagtcacgtgttgttatttcaagatctttggtatctgatgaatccatagtgtttattagc 1178
Query: 415 tatatat--agctagtg--tgttgatgcacctggcgatctgtcatgactgtgttgatggt 470
||||||| || ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1179 tatatatctag-tagtgaatgttgatgcacctggcgatctggcatgactgtgttgatggt 1237
Query: 471 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1238 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 1295
>3x_Contig1709
Length = 16948
Score = 155 bits (78), Expect = 2e-37
Identities = 154/177 (87%), Gaps = 3/177 (1%)
Strand = Plus / Minus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| |||| | |||| ||| |||||| | ||||||||||||||||| ||||
Sbjct: 12761 cagtcacgtgttgttaaattaaaatctttggtatctggtgaatccatagtgtttattagc 12702
Query: 415 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 471
||||||| || | || ||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 12701 tatatatctagtaatgtatgttgatgcacctggtgatctgtcatgactgtgttgatcgtc 12642
Query: 472 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 12641 tttgtccagatctaatacctccttatataataactcagattggttaatgatgtttca 12585
>3x_Contig1088
Length = 4585
Score = 151 bits (76), Expect = 3e-36
Identities = 155/178 (87%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 1128 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 1187
Query: 415 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 470
||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1188 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgaccgtgttgatggt 1246
Query: 471 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
| || |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1247 ccttgttcagatctaatgcctccttatataataactcagattggttaatgatgtttca 1304
>3x_Contig1769
Length = 25795
Score = 149 bits (75), Expect = 1e-35
Identities = 133/149 (89%), Gaps = 5/149 (3%)
Strand = Plus / Minus
Query: 384 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 439
|||||| |||||||||||| | |||| ||||||||||| || |||||| |||||||||
Sbjct: 24414 ggtatctgatgaatccatattctttattagctatatatctag-tagtgtatgttgatgca 24356
Query: 440 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 499
||| |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||
Sbjct: 24355 cctagcgatctgtcatgactgtgttgatcgtctttgtccagatctaatgcctccttatat 24296
Query: 500 aataactcagattggttaatgatgtttca 528
|||||||||||||||||||||||||||||
Sbjct: 24295 aataactcagattggttaatgatgtttca 24267
>3x_Contig1787
Length = 34189
Score = 147 bits (74), Expect = 5e-35
Identities = 153/177 (86%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| |||| | || | ||| |||||| ||| ||||||||||||||| ||||
Sbjct: 14224 cagtcacgtgttgttaaattaagatctttggtatctgataaatccatagtgtttattagc 14283
Query: 415 tatatat--agcta-gtgtgttgatgcacctggcgatctgtcatgactgtgttgatggtc 471
||||||| || | || |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14284 tatatatctagtaatgtatgttgatgcacctggcgatctggcatgactgtgttgattgtc 14343
Query: 472 tttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
|| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14344 cttacccggatctaatgcctccttatataataactcagattggttaatgatgtttca 14400
>3x_Contig1464
Length = 11693
Score = 135 bits (68), Expect = 2e-31
Identities = 153/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| || ||||| | ||| |||||| ||||||||||||||||||| ||||
Sbjct: 5557 cagtcacgtgttgttgtttcaagatctttggtatctgatgaatccatagtgtttattagc 5498
Query: 415 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 470
||||||| || |||||| ||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 5497 tatatatctag-tagtgtatgttgatgtacctggcgatctggcatgactgtgtcgatggt 5439
Query: 471 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
| || |||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5438 ccttgttcagatctaatgcctccttatataataattcagattggttaatgatgtttca 5381
>3x_Contig1605
Length = 12373
Score = 127 bits (64), Expect = 4e-29
Identities = 152/178 (85%), Gaps = 5/178 (2%)
Strand = Plus / Minus
Query: 355 cagtcacgtgtaattaattcaaaaccttcggtatcagatgaatccatagtgtttactagc 414
||||||||||| |||| | || | ||| |||||| ||||||||||||| ||||| ||||
Sbjct: 315 cagtcacgtgttgttaaattaagatctttggtatctgatgaatccatagcgtttattagc 256
Query: 415 tatatat--agctagtgt--gttgatgcacctggcgatctgtcatgactgtgttgatggt 470
||||||| || |||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 255 tatatatctag-tagtgtatgttgatgcacctggcgatctggcatgactgtgttgatcgt 197
Query: 471 ctttccccagatctatggcctctttatataataactcagattggttaatgatgtttca 528
| || |||||| | ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 196 ccttgtacagatccaatgcctccttatataataactcagattggttgatgatgtttca 139
>3x_Contig1803
Length = 52241
Score = 119 bits (60), Expect = 1e-26
Identities = 130/150 (86%), Gaps = 5/150 (3%)
Strand = Plus / Plus
Query: 384 ggtatcagatgaatccatagtgtttactagctatatat--agctagtgt--gttgatgca 439
|||||| ||||||||||||| ||||| ||||||||||| || |||||| |||||||||
Sbjct: 34931 ggtatctgatgaatccatagcgtttattagctatatatccag-tagtgtatgttgatgca 34989
Query: 440 cctggcgatctgtcatgactgtgttgatggtctttccccagatctatggcctctttatat 499
||||| |||||| ||||||||| ||||||||| || ||||||||| ||||| ||||||
Sbjct: 34990 cctggggatctggcatgactgtattgatggtccttgtccagatctaatgcctccttatat 35049
Query: 500 aataactcagattggttaatgatgtttcat 529
||||| ||||||| ||||||||| ||||||
Sbjct: 35050 aataattcagattagttaatgatatttcat 35079
>3x_Contig1648
Length = 16375
Score = 101 bits (51), Expect = 3e-21
Identities = 113/127 (88%), Gaps = 5/127 (3%)
Strand = Plus / Plus
Query: 622 gcctccttagcttagtgggaaagcgttgcacttgttatgccaaagggcgtta-ttcaatt 680
|||||||||||||||||| | |||||||||||||| ||| |||||| || || |||||||
Sbjct: 6161 gcctccttagcttagtggtagagcgttgcacttgtaatg-caaaggtcgctagttcaatt 6219
Query: 681 cttggcagggggcattcatcttttttaaatatccaatctggaccttcctcgaatctaatt 740
| ||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||| ||
Sbjct: 6220 c-tggcaggtggcatttatc-tttttcaatatccaatct-gaccttcctcgaatctattt 6276
Query: 741 ttttttt 747
|||||||
Sbjct: 6277 ttttttt 6283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,265
Number of Sequences: 1807
Number of extensions: 15265
Number of successful extensions: 413
Number of sequences better than 1.0e-20: 10
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)