BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZC08FM1.SCF screened BAC_end
         (968 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1757                                                        1007   0.0  

>3x_Contig1757 
          Length = 24754

 Score = 1007 bits (508), Expect = 0.0
 Identities = 600/624 (96%), Gaps = 5/624 (0%)
 Strand = Plus / Minus

                                                                         
Query: 234   ggaatgacacttgtagtatttttttgggtagggttgactggtttctgtggtggatacctg 293
             |||||| ||||||||||| |   |||||| || ||||||||||||||||||||| |||||
Sbjct: 18120 ggaatgtcacttgtagtaatcggttgggttggtttgactggtttctgtggtggagacctg 18061

                                                                         
Query: 294   atcgatcttggtacgcctctactatgaccgccgcttcttatagtaccagtagtggttcta 353
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18060 atcgatcttggtacgcctctactaggaccgccgcttcttatagtaccagtagtggttcta 18001

                                                                         
Query: 354   ttatcattagtagttggtgtaagtattcctgtagcctgatatgagggagatgctttaggt 413
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18000 ttatcattagtagttggtgtaagtattcctgtagcctgatatgagggagatgctttaggt 17941

                                                                         
Query: 414   tttatcactgggacgttgatacttctcgatatttcgttgtccgtgtcagtacgtgcagga 473
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17940 tttatcactgggacgttgatacttctcgatatttcgttgtccgtgtcagtacgtgcagga 17881

                                                                         
Query: 474   acgattggtgtatctatgatcttcgtgaaatcttatctttccagttcttgtgatttagat 533
             ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 17880 acgattggtgtatctatgatcttcgtgaaatctttactttccagttcttgtgatttagat 17821

                                                                         
Query: 534   tgttccgtcttcaactgttgtacatgtcttttctgtatttgtgatacaatgttgttgaac 593
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17820 tgttccgtcttcaactgttgtacatgtcttttctgtatttgtgatacaatgttgttgaac 17761

                                                                         
Query: 594   gaattagaataggagttgaattgcgaggtattaagcgttggggccattgagaatgcgaac 653
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17760 gaattagaataggagttgaattgcgaggtattaagcgttggggccattgagaatgcgaac 17701

                                                                         
Query: 654   attagcgggatgaacgattctgtgatgagttcttttttgtcttggatagctgtgtataaa 713
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 17700 attagcgggatgaacgattctgtgatgagttcttctttgtcttggatagctgtgtataaa 17641

                                                                         
Query: 714   tgtgggaagaattctatgaatttcattagaatccgtgagtctctactcttcattgatttt 773
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17640 tgtgggaagaattctaggaatttcattagaatccgtgagtctctactcttcattgatttt 17581

                                                                         
Query: 774   atcaatggggaacacgtcttcttggatcaatgttagtatccattgccgttggattggnat 833
             ||||||||| |  ||||| ||||||||| ||||  |||||||||| ||||||||||| ||
Sbjct: 17580 atcaatgggaacaacgtc-tcttggatc-atgtaggtatccattg-cgttggattgg-at 17525

                                     
Query: 834   catattttggaaagcaagatatgc 857
             |||| ||||| |||||||||||||
Sbjct: 17524 catagtttgg-aagcaagatatgc 17502


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6255
Number of Sequences: 1807
Number of extensions: 6255
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)