BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 805 0.0
3x_Contig1439 159 1e-38
>3x_Contig959
Length = 3065
Score = 805 bits (406), Expect = 0.0
Identities = 478/501 (95%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 388 gccaagttgaagctagaccaagcttcctacaaccacgcaaacttgggtaaattaagttac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaagttgaagctagaccaagcttcctacaaccacgcaaacttgggtaaattaagttac 60
Query: 448 aaagtcgtctcagaaccatggatgtacggtactgattctccaaatgataagaccccaatg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagtcgtctcagaaccatggatgtacggtactgattctccaaatgataagaccccaatg 120
Query: 508 ctacaatgttacatgtacttgaaactagaccatcccgatgctaaccattactccgtgcca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctacaatgttacatgtacttgaaactagaccatcccgatgctaaccattactccgtgcca 180
Query: 568 ttgaggttttcaccagttttcgaatacttgtctttgaaatttgttagaatggattattta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgaggttttcaccagttttcgaatacttgtctttgaaatttgttagaatggattattta 240
Query: 628 ccttctggtgctgatgaactatacatcanagaaacttt-ccattcaaggcattcccaact 686
|||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct: 241 ccttctggtgctgatgaactatacatcaaagaaactttaccattcaaggcaatcccaact 300
Query: 687 gtcgaataccacccagacgtcatcgagaactttcatgaacgtgaatgcttgaaaccatta 746
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct: 301 gtcgaataccacccagacgtcatcgagaacttccaggaacgtgaaggcttgaaaccatta 360
Query: 747 cttattcaacaacctgaaagtgcctctttcaacgttgacggtaccaagatactttggcaa 806
|| || |||||||||||| ||||||||||||||||||||||||| ||||| |||||||
Sbjct: 361 ctcatccaacaacctgaaggtgcctctttcaacgttgacggtacaaagatcacttggcaa 420
Query: 807 ggttgggattttagagtcgctaccaactgtaaggaaagttttcccgtgtatgatgttaac 866
|||||||| |||||||||||||| ||||||| |||| |||| | ||||||||||| ||
Sbjct: 421 ggttgggaatttagagtcgctacgaactgtagggaaggtttcgcgttgtatgatgttcac 480
Query: 867 ttcaagggcaaatccttgatc 887
|||||||||| ||||||||||
Sbjct: 481 ttcaagggcagatccttgatc 501
>3x_Contig1439
Length = 7662
Score = 159 bits (80), Expect = 1e-38
Identities = 126/140 (90%), Gaps = 1/140 (0%)
Strand = Plus / Plus
Query: 130 caaaggacatggctatacaatacttgatcattgaacgatacagcggtggtaaattgccat 189
||||||||| |||||| |||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 6905 caaaggacaaggctattcaatacttgaacattgaacgttacggcggtggtaaattgccat 6964
Query: 190 acatcccaagcaagaacatatgctcattactacatcaatgacaagatgcctttgttcaag 249
|||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||| |||
Sbjct: 6965 acatcccaag-aagaacatatgcttattactacatgaatgacaagatggctttgttgaag 7023
Query: 250 gcaatcgttaacgtcagtga 269
| ||| ||||| || |||||
Sbjct: 7024 ggaatggttaaggtgagtga 7043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5851
Number of Sequences: 1807
Number of extensions: 5851
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 2
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)