BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC09FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1291 0.0
3x_Contig178 597 e-170
3x_Contig1750 353 4e-97
3x_Contig1797 333 4e-91
>3x_Contig1092
Length = 2520
Score = 1291 bits (651), Expect = 0.0
Identities = 736/766 (96%)
Strand = Plus / Plus
Query: 163 agatctgtatttggcgcacaaacattgatgacaggtggagatatatgcatcgactcaagg 222
|||||||||||||| ||| || ||||| | ||||||||||||| |||||||||| ||
Sbjct: 301 agatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcgactcaggg 360
Query: 223 agttttttttcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacct 282
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacct 420
Query: 283 aatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgttggtcca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgttggtcca 480
Query: 343 ccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttggacagca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttggacagca 540
Query: 403 tgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaa 600
Query: 463 tacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattg 660
Query: 523 aacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagtcaaaact 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagtcaaaact 720
Query: 583 gtatcagttgtagattgagagngaattgaatatggttacgggatctaatgagtcacgtga 642
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtga 780
Query: 643 tactacttggacaaaggccacctagccacaactcacttcacaatattctataaggatcca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tactacttggacaaaggccacctagccacaactcacttcacaatattctataaggatcca 840
Query: 703 attggttgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcata 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 attggttgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcata 900
Query: 763 gtgaagcaatcaaagctcaagaaattgaggaagtttccccttacaaatataacatctact 822
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 901 gtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaatataacatctact 960
Query: 823 tattatctnagcanaatattanatacaggaatgaatgctaaaaaaaagtctgtcattcaa 882
|||||||| | ||||| | ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 961 tattatctagcaaaaatataaaatacaagaatgaatgctaaaaaagagtctgtcattcaa 1020
Query: 883 aatctagtncaacaatccctcgtacatggcttgaactgtgaactat 928
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aatctagtccaacaatccctcgtacatggcttgaactgtgaactat 1066
>3x_Contig178
Length = 1315
Score = 597 bits (301), Expect = e-170
Identities = 399/429 (93%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 163 agatctgtatttggcgcacaaacattgatgacaggtggagatatatgcatcgactcaagg 222
|||||||||||||||||| || ||||| | ||||||||||||| |||||||||| ||
Sbjct: 789 agatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcgactcaggg 730
Query: 223 agttttttttcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacct 282
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggcatcacct 670
Query: 283 aatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgttggtcca 342
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgttggtcca 610
Query: 343 ccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttggacagca 402
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 609 ccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttggacagca 550
Query: 403 tgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaa 462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgataaataaa 490
Query: 463 tacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgcatctattg 430
Query: 523 -aacagagataagcagag-gcgtaacgagaaaattaatcttcaatgggacttagtcaaaa 580
|||| | ||||||| || | |||| | ||||||||||||||||| ||||||||||||
Sbjct: 429 caacacacataagcacagcacctaaccacaaaattaatcttcaatgccacttagtcaaaa 370
Query: 581 ctgtatcag 589
|||||||||
Sbjct: 369 ctgtatcag 361
>3x_Contig1750
Length = 14427
Score = 353 bits (178), Expect = 4e-97
Identities = 277/309 (89%), Gaps = 2/309 (0%)
Strand = Plus / Plus
Query: 589 gttgtagattgagagngaattgaatatggttacgggatctaatgagtcacgtgatactac 648
|||||| |||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 649 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 708
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 709 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 768
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagcgggattgtttcacgcatagtgaag 13694
Query: 769 caatcaaagctcaagaaattgaggaagtttccccttac-aaatataacatctacttatta 827
|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 13695 caatcaaagctcaagaaattgaggaagtttacccctacaaaatataacatctacttatta 13754
Query: 828 tctnagcanaatattanatacaggaatgaatgctaaaaaaaagtctgtcattcaaaatct 887
||| | | ||||| | ||||| |||||||| ||||||| || ||||||||||||||||
Sbjct: 13755 tctaacaaaaatataaaatacaagaatgaatactaaaaagaa-tctgtcattcaaaatcc 13813
Query: 888 agtncaaca 896
||| |||||
Sbjct: 13814 agtccaaca 13822
>3x_Contig1797
Length = 34782
Score = 333 bits (168), Expect = 4e-91
Identities = 276/311 (88%), Gaps = 2/311 (0%)
Strand = Plus / Minus
Query: 589 gttgtagattgagagngaattgaatatggttacgggatctaatgagtcacgtgatactac 648
|||||| |||||||| |||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 649 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 708
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 709 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 768
|||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaacgggattgtttcacgaatagtgaag 32377
Query: 769 caatcaaagctc-aagaaattgaggaagtttccccttac-aaatataacatctacttatt 826
|||||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 32376 caatcaaagctcaaagaaattgaggaagtttacctgtacaaaatataacatctacttatt 32317
Query: 827 atctnagcanaatattanatacaggaatgaatgctaaaaaaaagtctgtcattcaaaatc 886
|||| | | ||||| | ||||| |||||||| |||||||| | |||| |||||||||||
Sbjct: 32316 atctaacaaaaatataaaatacaagaatgaatactaaaaaagaatctggcattcaaaatc 32257
Query: 887 tagtncaacaa 897
||| ||||||
Sbjct: 32256 cagtccaacaa 32246
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6650
Number of Sequences: 1807
Number of extensions: 6650
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 4
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)