BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC09RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1053 0.0
>3x_Contig1672
Length = 13609
Score = 1053 bits (531), Expect = 0.0
Identities = 714/766 (93%), Gaps = 7/766 (0%)
Strand = Plus / Minus
Query: 174 aacgataccaaaatgtgcgttgattatttaaccttatacgcttattgtatctatagagat 233
|||||||| ||||| |||||| || | || ||||||| |||||||||||||| |||||||
Sbjct: 6795 aacgatacgaaaatatgcgtttatcacttcaccttatccgcttattgtatctctagagat 6736
Query: 234 ccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttgggaga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6735 ccactgtaagaaggattaccaattaatgataacgaaaattatgaaggaaattttgggaga 6676
Query: 294 tcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaatcg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6675 tcttatattcgtaattccaccaaacacttcactattatcaccagagcagctgaaaaatcg 6616
Query: 354 cattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatcaac 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6615 cattatattgaaaagtaagaagacgcatgctgtagagtctgaaattataagtggatcaac 6556
Query: 414 ttcatcctatacgtcttcttcctctcatgaatcactttctgaaacaaatgacatgcggtt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6555 ttcatcctatacgtcttcttcctctcatgaatcactttctgaaacaaatgacatgcggtt 6496
Query: 474 aatcaagaagcggggcttacaaaaaagtactaccagtagcacttctccaaatacgatcac 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6495 aatcaagaagcggggcttacaaaaaagtactaccagtagcacttctccaaatacgacaac 6436
Query: 534 agttccagtgacatcaaagagaaacaacatatcgttattgttatcaacanagatcatgat 593
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 6435 agttccagtgacaacaaagagaaacaacaaatcgttattgttatcaacaaagatcatgat 6376
Query: 594 atcagacaaggttcatgaaatatctgggattcacggagtaagattcagaaacttttcgtt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6375 atcagacaaggttcatgaaatatctgggattcacggagtaagattcagaaacttttcgtt 6316
Query: 654 ggctgaatcaaaaa-cactacgcattgcttctcactaagtgagaaagaagtttatcaatc 712
| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6315 gcctgaatcaaaaaccactacgcattgcttctcactaagtgag-aagaagtttatcaatc 6257
Query: 713 ttgaccaagatgaaactcaaaacctcgctttcaacaagcctaaccgcagac-tttaatga 771
||||| |||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||
Sbjct: 6256 ttgacaaagatgaaactcaaaaactcgctatcaacaagcataaccgcagacatttaatga 6197
Query: 772 ggatttattccgacatgttggcggacaaattctcc-atttcaacccaattcaattttgga 830
| || ||| | |||||||| | |||||| |||| ||||||||||||| | ||||||||
Sbjct: 6196 gaatctatccgcacatgttgcggtacaaatcctccaatttcaacccaatacgattttgga 6137
Query: 831 aagaaggaattccaaaggtcggaacaaacttggca-aagtttaacc-gggaaaccattgg 888
|||||||| | | || ||||| ||||||| ||||| | || | ||| |||| | || | |
Sbjct: 6136 aagaaggagtacaaatggtcgcaacaaac-tggcagacgtatgacctgggacaacaattg 6078
Query: 889 aaccgtgcatggttccaaatttcactagatagaaattccatctggc 934
|||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct: 6077 aaccatgcaatgttccaagtttcactagatagaaattccatctggc 6032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7599
Number of Sequences: 1807
Number of extensions: 7599
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)