BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC10FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 757 0.0
>3x_Contig1565
Length = 10922
Score = 757 bits (382), Expect = 0.0
Identities = 422/434 (97%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 469 caatccattgatatttacaagacggtgaattccaggatatcgaatgttggttcgcatatt 528
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10169 caatccattgatatttagaagacggtgaattccaggatatcgtatgttggttcgcatatt 10228
Query: 529 gcagcaagagtttcaactcctgccatagagttagacttatgtttgttaagaaacaaaaat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10229 gcagcaagagtttcaactcctgccatagagttagacttatgtttgttaagaaacaaaaat 10288
Query: 589 gaccactgatatcaaatccgcctacccagctcccacctaaagatctacatttctctgcag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10289 gaccactgatatcaaatccgcctacccagctcccacctaaagatctacatttctctgcag 10348
Query: 649 atttcgtatcagaaagatcgcagtttcctcccgtccacacgaaaagatggtcgatgaaca 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10349 atttcgtatcagaaagatcgcagtttcctcccgtccacacgaaaagatggtcgatgaaca 10408
Query: 709 agaaacaggcccataataccaggtataccaaaacaaactttatcgaatatacttttaaaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 10409 agaaacaggcccataataccaggtataccaaaacaaactttatcgaatatacttttagaa 10468
Query: 769 ctttcccaacttgtttcagaagatcgggagaattacgggcctgttctccattactagtgg 828
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10469 ctttcccaacttgtttcagaagatcgggagaattacggtcctgttctccattactagtgg 10528
Query: 829 gtaacaacgattcctggtgcttcattcgaaacttaactggtaggcctatcaataaaccga 888
||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 10529 gtaacaacgattcctcgtgcttcattcgaacgtatacttgtaggcctatcaataaaccga 10588
Query: 889 ccaa-acgtcgaat 901
||| |||||||||
Sbjct: 10589 acaatacgtcgaat 10602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5506
Number of Sequences: 1807
Number of extensions: 5506
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)