BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC10RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 686 0.0
>3x_Contig1771
Length = 25932
Score = 686 bits (346), Expect = 0.0
Identities = 432/458 (94%), Gaps = 2/458 (0%)
Strand = Plus / Plus
Query: 405 aaggcatacgtatttagaaaggtaactttacaagatcaatgaacgcacattagcacttga 464
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9935 aaggcatacgtatttagaagggtaactttacaagatcaatgaacgcacattagcagttga 9994
Query: 465 cgaatgcgtttttgccggatcgtgcaactagtttgtggttcgagtctatatgaataagga 524
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 9995 cgaatgcgtttttgccggattgtgcaactagtttgtggttcgagttaatatgaataagga 10054
Query: 525 ggtatttacaatttattgacgtctgttgggagcttacgttttggacccttatgacgtacc 584
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10055 ggtatttacaatttagtgacgtctgttgggagcttacgttttggacccttagaacgtacc 10114
Query: 585 tttgttagcattttctttgtcttcgcattcaatgcgtcagatgatgatgttgcagatgat 644
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10115 tttgttagcattttctttgtcttcgcattcaatgcgtcagatgatgagtttgcagatgat 10174
Query: 645 gcagttgacgacgccaatgccgatagagaggcctgactactgttgattg-tttaatcagt 703
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10175 gcagttgacgacgccaatgccgatagagaggcctgactactgttgattgttttaatcagt 10234
Query: 704 tgcttttggaactttgagccatgcttttgtaggctctttaatgatgaagagga-ttcttt 762
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 10235 tgcttttggaactttgagccatgcttttgtaggctctttaatgatgaagaggatttcttt 10294
Query: 763 tcaatttccgattccgttgaagatcttaaaagaacttgccttttttgcatcgcttcagga 822
|||||||||||||||||||| ||||| |||||| ||||||| ||| ||||||||||||
Sbjct: 10295 tcaatttccgattccgttgaggatctcaaaagagcttgcctctttgccatcgcttcaggt 10354
Query: 823 ttttcttctccaaaactgaaagaaaaatgaagtttgtt 860
|||||||| || |||||| |||| || || |||||||
Sbjct: 10355 atttcttctacagaactgatagaagaaggaggtttgtt 10392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,306
Number of Sequences: 1807
Number of extensions: 10306
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)