BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC11FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 1235 0.0
>3x_Contig1666
Length = 16162
Score = 1235 bits (623), Expect = 0.0
Identities = 691/710 (97%), Gaps = 3/710 (0%)
Strand = Plus / Plus
Query: 224 gatatctttgctgagggagtggctttcatctagtaacagcaaacacatcaatgcaagatg 283
||||| |||| ||||||||||| ||| || |||||| || ||| |||| |||||||||||
Sbjct: 121 gatatatttgatgagggagtggatttaatatagtaaaagaaaaaacataaatgcaagatg 180
Query: 284 tacacctgaaaacaccaaatggtcggacaaaaacttgaacttctcaaaaggacaatttac 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacacctgaaaacaccaaatggtcggacaaaaacttgaacttctcaaaaggacaatttac 240
Query: 344 aatagcagtcaatcctaagtgtgcatgctccagtataaaaga-cacttgggctggtaata 402
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 241 aatagcagtcaatcctaagtgtgcatgctccagtataaaagagcacttgggctggtaata 300
Query: 403 ttgatgcaacaactttcttcagtggataagtcaaatttaagtaatctgctatagctgtct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgatgcaacaactttcttcagtggataagtcaaatttaagtaatctgctatagctgtct 360
Query: 463 tggtggaatttgttgcagaattaaacaaaggcagattgtctggaggatgtgtggttacat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggtggaatttgttgcagaattaaacaaaggcagattgtctggaggatgtgtggttacat 420
Query: 523 agtgtttatgataccacgaatagtgaaccaaacagatactatagtgataattaaattcca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtgtttatgataccacgaatagtgaaccaaacagatactatagtgataattaaattcca 480
Query: 583 caaattgggtcacaggttgagtgaacaaataattccattgttctaaccaacctttaagtt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caaattgggtcacaggttgagtgaacaaataattccattgttctaaccaacctttaagtt 540
Query: 643 tagacaacactgtattcaaaggttgttggtcagatatgtcaaagaactccaaacttcgaa 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tagacaacactgtattcaaaggttgttggtcagatatgtcaaagaactccaaacttcgaa 600
Query: 703 taaacttataaactatccgagtgagttcaatctctgccaccattcttccgtcaaaattcg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taaacttataaactatccgagtgagttcaatctctgccaccattcttccgtcaaaattcg 660
Query: 763 tggaatgcngcagtttcaaagtgagtttacacatttctaaacttctatcgtcaattgtac 822
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggaatgcggcagttccaaagtgagtttacacatttctaaacttctatcgtcaattgtac 720
Query: 823 acattctaccggatgccacacatttgtttatatggcaatgacatagatggttcc-aagtc 881
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 721 acattctaccggatgccacacagttgtttatatggcaatgacatagatggttccaaagtc 780
Query: 882 tcgcagacgattattgttcgaattcttcttgttctccgaac-cgctattg 930
||||||||||| ||||||||||||||||| |||| ||||| ||||||||
Sbjct: 781 tcgcagacgataattgttcgaattcttctgtttcttcgaacacgctattg 830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6487
Number of Sequences: 1807
Number of extensions: 6487
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)