BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC11RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1449 1405 0.0
>3x_Contig1449
Length = 7865
Score = 1405 bits (709), Expect = 0.0
Identities = 837/869 (96%), Gaps = 8/869 (0%)
Strand = Plus / Plus
Query: 49 ggcgtagagcttgcacttgttgacggtttatcaagtgtaggtggtgcatgtgagtgatgg 108
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 6744 ggcgtagagcttgcacttgtagacggtttagcaagtgtaggtggtgcatgtgagtgatgg 6803
Query: 109 gcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6804 gcatgttccttcctggcattgttgaaagcatccgcttcttcccctggttcatgtaaaaac 6863
Query: 169 atacagttcggatttggacatggttgtcccctcaaatacgaggagcattactttgttgta 228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6864 atacagttcggatttggacatggttgtcccctcaaatacgaggagcagtactttgttgta 6923
Query: 229 ccatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaatacat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6924 ccatatgctgctttcacttgatgtccatcaatatagataccatctatggcttgaatacat 6983
Query: 289 tttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6984 tttgctgcatcgtcttttctggaaaaagtaacgtaaataccgtaacctgaatttatatga 7043
Query: 349 ctcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatcttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7044 ctcgatgaatttgaaacagaatggtgctcgtgtccagtcttcttattgatgacgatcttg 7103
Query: 409 ttaatttttccatactggccaaaatacttgtccgatctcaagatggatggaagttcttcg 468
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7104 ttaattttttcatactggccaaaatacttgtccgatctcaagatggatggaagttcttcg 7163
Query: 469 taagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcata 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7164 taagggtaaggtggattcaacccaataacgtaaaccaaattcttctgaatgaccctcata 7223
Query: 529 ccagcaagctgtttcctattatgagtgtcattttctctacgttcacgctccctttgctta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7224 ccagcaagctgtttcctattatgagtgtcattttctctacgttcacgctccctttgctta 7283
Query: 589 cgatcacgttcttttctggcctgcttggaacgtttcattttcaactcttctggagaaaga 648
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7284 cgatcacgttcttttctggcctgcttggaacgttccattttcaactcttctggagaaaga 7343
Query: 649 acgatgtactcgacgctttcatcgtcgtactttcgacgaacagccggacatcgaccatta 708
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7344 acgatgtactcgacgctttcatcgtcgtactttcgacgacaagccggacatcgaccatta 7403
Query: 709 agctcaggattttgacgaat-ttgttattaccaaactgacaaatctgattttcacaaaga 767
|||||||||||||||||||| ||||||| || ||||||||||||||||| | ||||| ||
Sbjct: 7404 agctcaggattttgacgaatattgttataacaaaactgacaaatctgatatccacaagga 7463
Query: 768 ccagggcttgaattgcttatccataacatcgagtggttctatacaaattgga-acaagtc 826
|| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 7464 -caaggcttgaaatgcttatccataacatcgagtggttctatacaaagtggacacaagtc 7522
Query: 827 ctttttgtcatccgttatagaa-gacgtatccgaatttgaataaagcttttggaat-tca 884
|| || |||||||| || |||| |||||||| |||||| |||||||||| |||| |||
Sbjct: 7523 ctcttcgtcatccgata-agaaggacgtatcgtaatttg-ataaagctttctgaatctca 7580
Query: 885 ggctgatttctgatgaacatgccgatttt 913
||||| ||||||||||||||| ||||||
Sbjct: 7581 tgctga-ttctgatgaacatgcggatttt 7608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6436
Number of Sequences: 1807
Number of extensions: 6436
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)