BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC12FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1471 0.0
>3x_Contig1738
Length = 21411
Score = 1471 bits (742), Expect = 0.0
Identities = 821/840 (97%), Gaps = 6/840 (0%)
Strand = Plus / Minus
Query: 90 taaacgattcttcttcca-aatggtagtttgaaccacttctgaatttgggaagacacccc 148
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 16937 taaacgattcttcttccacaatggtagtttgaaccacttctgaatttgggaagacacccc 16878
Query: 149 atgtgacagcattggagcttttattttgtaggttagtttcgaagtaacccgtataatcac 208
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16877 atgtgacagcattggagcttttaggttgtaggttagtttcgaagtaacccgtataatcac 16818
Query: 209 ccaa-tataaactaa-ctcaccgttcttgctttcaatctttggtttgagaacctgattcc 266
|||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16817 ccaagtaataactaaactcaccgttcttgctttcaatctttggtttgagaacctgattcc 16758
Query: 267 attcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattggcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16757 attcttcctttcgaacaaatatttctacaaaggccttttgatagattaaaccattggcag 16698
Query: 327 gtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgaggcca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16697 gtccccatccgaagatattatcagtactttgtgatccatttgttgcaggttgtgaggcca 16638
Query: 387 aggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggtttcag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16637 aggaaaggtatccacgttggttcaactctataagttcttcttgaatgaatgcggtttcag 16578
Query: 447 cagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaggtatcgtatga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16577 cagaaagtccaagatctgaccatggtagtgccttcattgagccctcaaggtatcgtatga 16518
Query: 507 aaatgtttttgatatcctccaaagaaaccggatgatcccaaagttcgtatgccgtgctgn 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16517 aaatgtttttgatatcctccaaagaaaccggatgatcccaaagttcgtatgccgtgctgt 16458
Query: 567 tacaaactttgagcgatggtccgtacccatcaatttcaccgtacgcgggagatctcgaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16457 tacaaactttgagcgatggtccgtacccatcaatttcaccgtacgcgggagatctcgaat 16398
Query: 627 caccgaatctaccgttgggaaactcatcccaagtaacatttctacctaataccccagtac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16397 caccgaatctaccgttgggaaactcatcccaagtaacatttctacctaataccccagtac 16338
Query: 687 cctgagagatggagatcatgactttacgagatggaactgatggaactcggttaccatgcg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16337 cctgagagatggagatcatgactttacgagatggaactgatggaactcggttaccatgcg 16278
Query: 747 acattccattcagcttattgataattgacgtattcagagggaaatcagtactagcactgg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16277 acattccattcagcttattgataattgacgtattcagagggaaatcagtactagcactgg 16218
Query: 807 attggctctttcttttcttaatattgncatcatccaaagtcaaagaagtc-acgtcttgt 865
|||| ||| | |||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct: 16217 attgtgtctgtgttttcttaatattgtcatcatccaaagtcaaag-agtcaacgtcttgt 16159
Query: 866 aaga-aacgtctgagtcccattcatcatcggccctatcttcttcttcaaaaattttggat 924
|||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 16158 aagacaacgtctgagtcccattcatcatcggcctcatcttcttcttcaagaattttggat 16099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7369
Number of Sequences: 1807
Number of extensions: 7369
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)