BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZC12RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig989 1342 0.0
>3x_Contig989
Length = 4314
Score = 1342 bits (677), Expect = 0.0
Identities = 796/831 (95%), Gaps = 4/831 (0%)
Strand = Plus / Plus
Query: 48 ataaggtgttacattgttggtaatgggacgtcatatattgaaacatgttttcgcggtagg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 ataaggtgttacattgttggtaatgggacgtcatatattgaaacatgttttcgcggtagg 1870
Query: 108 aggaatctactgttcgtttttgacatggggtttattgcaagagcctttgaacactagagt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 aggaatctactgttcgtttttgacatggggtttattgcaagagcctttgaacactagagt 1930
Query: 168 atggccgaactctggctgtacgtttcaagtaccatacatagtcgcattggtacaggcaac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 atggccgaactctggctgtacgtttcaagtaccatacatagtcgcattggtacaggcaac 1990
Query: 228 aattgctatgatttgtgggttaatctatataaaatggcagaaacctgtgctttctctatc 287
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1991 aattgctatgatttgtgggttaatctatataccctagcagaaacctgtgctttctctatc 2050
Query: 288 gaaattttggaccagtcatacaaggg-atatggcgattatttcattatcccaggcaattt 346
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2051 gaaattttggaccagtcatacaagggcatatggcgattatttcattatcccaggcaattt 2110
Query: 347 ctgctccgttagctgcttactcgttaagctatgtggatttcttgacttatatgttggcaa 406
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2111 ctgctccgttagctgcttactcgttaagctatgtggatttcttgtcttatatgttggcaa 2170
Query: 407 agtcatgcaaacttttaccggtgctgatggtccatttgattgtgtaccgtacaccaattc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 agtcatgcaaacttttaccggtgctgatggtccatttgattgtgtaccgtacaccaattc 2230
Query: 467 caagaagtaagaaattagtggtactgttggtaacggttgggataacaatattcactttgg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 caagaagtaagaaattagtggtactgttggtaacggttgggataacaatattcactttgg 2290
Query: 527 atggacataaaccttctatgactgagaatgacgtttctgagagttcttcatcttcttcgt 586
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2291 atggacataaaccttctatgactgagaatgacgtttcttagagttcttcatcttcttcgt 2350
Query: 587 tgataggntttgtgctgctgggtagcagtcttttccttgatggattaaccaacgctaaac 646
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 tgattggttttgtgctgctgggtagcagtcttttccttgatggattaaccaacgctaaac 2410
Query: 647 aggataagctatttcagaaagccacttataagatcactggtgctcatctaatgtttgcat 706
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2411 aggataagctattccagaaggccacttataagatcactggtgctcatctcatgtttgcat 2470
Query: 707 taaacctcttnctcattgtatgggacggaatatatatgggttctatttgatagacaacaa 766
||||| |||| || ||||||||| ||| ||||||||| ||||||| ||||||||||||||
Sbjct: 2471 taaacttcttcctaattgtatggaacgtaatatatat-ggttctagttgatagacaacaa 2529
Query: 767 ttgggcaaaagttttgaaaatgttacatgcggtatcagaaattaagtcggtttcttttgg 826
|| |||||||| |||||| ||||||||||||| |||||||| ||||| | |||| |||
Sbjct: 2530 tt-ggcaaaaggtttgaagatgttacatgcggatccagaaatt-agtcgttatcttctgg 2587
Query: 827 catacccctgttggcgggcaatcggtcaaagctttatcttttacactttgg 877
||||| ||||||| | |||||||||||| |||||||||| ||||||||||
Sbjct: 2588 catacgcctgttgcggcgcaatcggtcaatgctttatcttctacactttgg 2638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6705
Number of Sequences: 1807
Number of extensions: 6705
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)