BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZD01RM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1278                                                        1318   0.0  

>3x_Contig1278 
          Length = 6932

 Score = 1318 bits (665), Expect = 0.0
 Identities = 691/697 (99%), Gaps = 2/697 (0%)
 Strand = Plus / Plus

                                                                        
Query: 76   aaatgctatacaaattcacacagctatgagacaacttaagttcgccaccgtatgacatga 135
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 aaatgctagacaaattcacacagctatgagacaacttaagttcgccaccgtatgacatga 4877

                                                                        
Query: 136  tctcgaagaccgaaaactagaaaattaattcactatggggaagtttggactaccttaaac 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 tctcgaagaccgaaaactagaaaattaattcactatggggaagtttggactaccttaaac 4937

                                                                        
Query: 196  tttattcattaaaatcttaggaaatcgttcaggactaatcttctaaagtagtatggtatt 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 tttattcattaaaatcttaggaaatcgttcaggactaatcttctaaagtagtatggtatt 4997

                                                                        
Query: 256  gttttaattatagctttttcagtatatctgaaatagtaaatattaatgaagatgcatata 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4998 gttttaattatagctttttcagtatatctgaaatagtaaatattaatgaagatgcatata 5057

                                                                        
Query: 316  tagacgaattgaaaaaaggtactaacgacgtggggatatgaaagcattaggaatgaacgt 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5058 tagacgaattgaaaaaaggtactaacgacgtggggatatgaaagcattaggaatgaacgt 5117

                                                                        
Query: 376  taataatcgtggtattgtaaagtgatgaaggaactgaaacaatgaagtttgcattatttt 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5118 taataatcgtggtattgtaaagtgatgaaggaactgaaacaatgaagtttgcattatttt 5177

                                                                        
Query: 436  tcggtttgaagagaaatcttcaagctgcaaatgtgaaagtaaatactcaaaagatggatt 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5178 tcggtttgaagagaaatcttcaagctgcaaatgtgaaagtaaatactcaaaagatggatt 5237

                                                                        
Query: 496  cttttatagtatctgttaacctattacaacaatagagcagcgatggcggcgataccagca 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5238 cttttatagtatctgttaacctattacaacaatagagcagcgatggcggcgataccagca 5297

                                                                        
Query: 556  ccggcaccgaaggtgaccttgccagcgttgttgccggattcagtcttgatccagacggat 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5298 ccggcaccgaaggtgaccttgccagcgttgttgccggattcagtcttgatccagacggat 5357

                                                                        
Query: 616  tgagtaccagtggtagcttgaatttggccatcaccgatttgagagactggggcaacagtt 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5358 tgagtaccagtggtagcttgaatttggccatcaccgatttgagagactggggcaacagtt 5417

                                                                        
Query: 676  tggacgacgttaggatcctttgatgtggtttctggaacaatggtagtggtttctggggca 735
            ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5418 tggacgacgttagaatcctttgatgtggtttctggagcaatggtagtggtttctggggca 5477

                                                 
Query: 736  gcctgagaaagtttctggggcagcttgaggaagtttc 772
            | ||||| |||||||||||||||| ||||||||||||
Sbjct: 5478 g-ctgaggaagtttctggggcagc-tgaggaagtttc 5512


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6847
Number of Sequences: 1807
Number of extensions: 6847
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)