BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD02FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1435 0.0
>3x_Contig1536
Length = 11572
Score = 1435 bits (724), Expect = 0.0
Identities = 842/874 (96%), Gaps = 6/874 (0%)
Strand = Plus / Plus
Query: 83 agcttagtggttcatgaacgatgttcgagaattaatacctcaatgcgatgttatcttaat 142
||||| |||| | |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 7929 agcttcgtggataatgaacga-gttcgtgaattaatacctcaatgtgatgttatcttaat 7987
Query: 143 caacatctttattttcgatgctcctttgaacaaagaagcagataaggttgtacaaggcct 202
||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 7988 caacaactttattttcgatgctcctttgaacaaagaagtagaaaaggttgtacaaggcct 8047
Query: 203 caaggccgggtccaatattatttctttgaaaagcatacgacctcctggttacagtataaa 262
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8048 caaggccgggtccaagataatttctttgaaaagcatacgacctcctggttacagtataaa 8107
Query: 263 ttacgatgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8108 ttacgatgacatggacaatatcttcaaccgattacatgtagagtcattcaagctccctga 8167
Query: 323 aaacagtgtttcatggacctacagaagtgttggtgattattatatcagtactgtattgga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8168 aaacagtgtttcatggacctacagaagtgttggtgattattatatcagtactgtattgga 8227
Query: 383 tgcaattgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8228 tgcaattgatgagtcgattttctgtcctccgattttaggtaggattagaaaaaaagaatc 8287
Query: 443 aatcaagtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacct 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8288 aatcaagtataccagatagtaaagtcaatgctttagaccatgtcgttatttgctttacct 8347
Query: 503 gtgaaatagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagat 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8348 gtgaaatagttttataagatctatttataacacaatgcaagtaatcgaatataaaaagat 8407
Query: 563 aaaatcaccagtaatgatacaaacagtttttttacttcttgatatgtaagttatgctaaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408 aaaatcaccagtaatgatacaaacagtttttttacttcttgatatgtaagttatgctaaa 8467
Query: 623 ttgcactgtttatctatgttctgtagtatagtaatcgaattaagaagctccatagagagt 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8468 ttgcactgtttatctatgttctgtagtatagtaatcgaattaagaagctccatagagagt 8527
Query: 683 tttaaaacgtggtttagctgggttcattttgataaagcctcttcctgaccacttaacaaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8528 tttaaaacgtggtttagctgggttcattttgataaagcctcttcctgaccacttaacaaa 8587
Query: 743 gtaaaagatggtgcctgtagtttttgagtacctttcaagaaatcc-actccattacggaa 801
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 8588 gtaaaagatggtgcctgtagtttttgagtacctttcaagaaatccaactccataacgaaa 8647
Query: 802 cagaactccaagatgtttgcattcaaactgc-aagcccagtcaccgnttgcttttgcggg 860
|||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||
Sbjct: 8648 cagaactccaagatgtttgcattc-aactgcaaagccaagtcaccggctgcttttgcgga 8706
Query: 861 accaccggtggcaatgatattatcgacaataacgacgttngaatgtttangggatagaac 920
||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||||
Sbjct: 8707 gccaccggtggcaatgatatcatcgacaataacgacgtttgaatgttca-gggatagaat 8765
Query: 921 aaccctggattttcaaaacat-tttaccgtactc 953
| ||||||||| ||||||| || |||||||||
Sbjct: 8766 cagcctggatttcgaaaacatcttcaccgtactc 8799
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7149
Number of Sequences: 1807
Number of extensions: 7149
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)