BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD02RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 987 0.0
>3x_Contig1448
Length = 10333
Score = 987 bits (498), Expect = 0.0
Identities = 564/585 (96%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 132 actgaatcgattccaatcaccccacggtttaaatgacagaactggttccaatctgaatca 191
|||||||||||| ||||||| ||| ||| |||| |||||||||| |||||||||||||||
Sbjct: 9342 actgaatcgatttcaatcactccagggtataaaggacagaactgtttccaatctgaatca 9401
Query: 192 cagggatcaatctgtctgtcaataatattgaatccgtatgcgtacacctcatcatgagca 251
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9402 cagggatcaatctgtctgttaataatattgaatccgtatgcgtacacctcagcatgagca 9461
Query: 252 atgacgtacccattgatatcggcagttatatccaaagtataacgcaatgatccgtcatcc 311
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9462 atgacgtacccattgatatcggtagttatatccaaagtataacgcaatgatccgtcatcc 9521
Query: 312 gggttgaagaccacatcaaaactgttagccgttaactcagagttatccatacatgatacc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9522 gggttgaagaccacatcaaaactgttagccgttaactcagagttatccatacatgatacc 9581
Query: 372 aacgaggtagcaatcaaactacgtctagcaaacacatttgatacaagaagggacaaaagc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9582 aacgaggtagcaatcaaactacgtctagcaaacacatttgatacaagaagggacaaaagc 9641
Query: 432 acccacagccttattaccatgttcatcttcaaaagagaaagcttagctggaaaaaagtat 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9642 acccacagccttattaccatgttcatcttcaaaagagaaagcttagctggaaaaaagtat 9701
Query: 492 aagttatcaagcgttcaacactttctaaccaactaaatgaataataagggcttcttttcc 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9702 aagttatcaagcgttcaacactttctaaccaactaaatgaataataagggcttcttttcc 9761
Query: 552 tttactaattcagaagtcagatcaaatcaaaataagcacagtatttcccacggaccggaa 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9762 tttactaattcagaagtcagatcaaatcaaaataagcacagtatttcccacggaccgaaa 9821
Query: 612 ttaaaatcctgatctattttcctttattaacgncttttcaccgacagacgtgaagttaag 671
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct: 9822 ttaaaatcctgatctattttcctttattaacgctttttcaccgacagacgtgaggttagg 9881
Query: 672 gtattccttggttaaaaatttgataagccctttcgccatttgcca 716
|||| ||| ||| |||||||||||||||||| ||||||||||
Sbjct: 9882 ttatt-ctttgtttaaaatttgataagcccttcgcccatttgcca 9925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7587
Number of Sequences: 1807
Number of extensions: 7587
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)