BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD04RM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 940 0.0
>3x_Contig1792
Length = 28468
Score = 940 bits (474), Expect = 0.0
Identities = 502/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 42 aagcttcgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatcct 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6448 aagcttcgaagtgatggcaactgcactggcttattctgattcaaactgggtaacaatcct 6389
Query: 102 tccggtggaggactgtgcgttggagtgcacagtaaacttgaaaaatgactttggaaatag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6388 tccggtggaggactgtgcgttggagtgcacagtaaacttgaaaaatgactttggaaatag 6329
Query: 162 taatctttttcgtccttactgttccttaccggcagttgatccatcgatctaagccttgaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6328 taatctttttcgtccttactgttccttaccggcagttgatccatcgatctaagccttgaa 6269
Query: 222 tgaagttcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6268 tgaagttcatcataaaattctccttctgtagctgagccggaacttggtggcattgtagaa 6209
Query: 282 ctaggtctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6208 ctaggtctcatgatgggcattatggcttttgatttcttaagtggccggccatatgcatct 6149
Query: 342 tctgtactcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6148 tctgtactcatatcctcatcttgtgagattacggtttcttgcttcagtagagtagatatg 6089
Query: 402 cttacagtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 cttacagtacttgaatttcttgaatgttgatctatcagttggttgagactattggatgac 6029
Query: 462 cagaatctggagttaagtgcaaaagaactgaagcccgattgtgattgctgttccgacaga 521
|||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||
Sbjct: 6028 gagaatctggagttaagtgcagaggagctgaagcccgatggtgattgctgttccgacaga 5969
Query: 522 tttgttcacgaatctggttctaagcagacc 551
||||| |||| ||||||||||| |||||||
Sbjct: 5968 tttgtccacg-atctggttctaggcagacc 5940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8495
Number of Sequences: 1807
Number of extensions: 8495
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)