BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD05FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1604 0.0
>3x_Contig1502
Length = 14970
Score = 1604 bits (809), Expect = 0.0
Identities = 855/870 (98%), Gaps = 1/870 (0%)
Strand = Plus / Minus
Query: 88 tcctctttcttcccgatgatagaataaaatacttcaagcattagatcgaagagcaatggc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3313 tcctctttcttcccgatgatagaataaaatacttcaagcattagatcgaagagcaatggc 3254
Query: 148 acttcataaatcttagccatattcaataatcccaccgccacaggtgatagaggccattta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3253 acttcataaatcttagccatattcaataatcccaccgccacaggtgatagaggccattta 3194
Query: 208 ccatcaatttgttttttgaaaaaaaattccgcgaacgctttaacagtttctgtaggccaa 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3193 ccatcaatttggccagtgaaaaaaaattccgcgaacgctttaacagtttctgtaggccaa 3134
Query: 268 ggcatatataatgacctaggtatgaatagaggctcgaaatcaacatcgcccgaattcaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3133 ggcatatataatgacctaggtatgaatagaggctcgaaatcaacatcgcccgaattcaga 3074
Query: 328 gtttgactggtcagactctcagtatttgaagcaaatgagtttcgctcgttttgaggggta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3073 gtttgactggtcagactctcagtatttgaagcaaatgagtttcgctcgttttgaggggta 3014
Query: 388 gtcatgccatcagcttcgttatctggtttgtgtaaaggatctccgacaaatacctcatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 gtcatgccatcagcttcgttatctggtttgtgtaaaggatctccgacaaatacctcatca 2954
Query: 448 attctgtttggatagatattctcttgtgatatatgttgagaaatatcatggtgtaaagat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 attctgtttggatagatattctcttgtgatatatgttgagaaatatcatggtgtaaagat 2894
Query: 508 gatcttctacttgataatggagaagttgaagttcgatagcgagtatccggaaaaaaatga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 gatcttctacttgataatggagaagttgaagttcgatagcgagtatccggaaaaaaatga 2834
Query: 568 tccgaaagtcgattgtcaacactaaaatcatgcgatgtatgtgtaggtagcgcagggagc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 tccgaaagtcgattgtcaacactaaaatcatgcgatgtatgtgtaggtagcgcagggagc 2774
Query: 628 ggttcacttgggacaggcagtaatggtggtagcgaaacattcagactcagtatttcttca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 ggttcacttgggacaggcagtaatggtggtagcgaaacattcagactcagtatttcttca 2714
Query: 688 gatcctggacttctgtaaattgactctcccattctatcgcttgaagagctgacacgagaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 gatcctggacttctgtaaattgactctcccattctatcgcttgaagagctgacacgagaa 2654
Query: 748 attgaacttgacgtagaagctaatgaagctttacgggagcttaatggactattcagccca 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 attgaacttgacgtagaagctaatgaagctttacgggagcttaatggactattcagccca 2594
Query: 808 nagcttgaatgaagtnnaatatcattccccagtgactgagagaatctacgagattgagct 867
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2593 aagcttgaatgaagtaaattatcattccccagtgactgagagattctacgagattgagct 2534
Query: 868 tggctagatctccagaaatcgtcagtaaagaaagcagagtatgagcttgcagaaattttc 927
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 2533 tggctagatctcaggaaatcgtcagtaaagagagcagagtatgagcttgcagaatttttc 2474
Query: 928 ctatttcgaaggtacagatattttaattgg 957
||| ||||||||||||||||||||||||||
Sbjct: 2473 cta-ttcgaaggtacagatattttaattgg 2445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6346
Number of Sequences: 1807
Number of extensions: 6346
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)