BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD05RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1261 0.0
>3x_Contig1319
Length = 7600
Score = 1261 bits (636), Expect = 0.0
Identities = 690/706 (97%), Gaps = 2/706 (0%)
Strand = Plus / Minus
Query: 46 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 taagggtacaaacagaacaagaatacaaattaaacaacaaatggaaatctctggtaaaat 1487
Query: 106 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 gcatgagggtgacagtctagtggtaagtcctaaatcattagatgagctaccgataaacgt 1427
Query: 166 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagccacatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 tatattccagatactatcagagctcaaattctctgatttaaagaatgtgtcagccacatg 1367
Query: 226 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ctggacgttaagaattcttacgaatgaaaaattaatgtactatagtatacttcatgaccc 1307
Query: 286 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 aaagaatcaatatttatggacgaaaagatactttttagattcgctaaggatgttacaaag 1247
Query: 346 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gaatagacgaggtttcgattttgtatctttgaatgacacaacattctttcaatccctgcg 1187
Query: 406 atatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaatcaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 atatctgcataatggagtaaggaaggtctcagggaacctcttgagactgttagaatcaaa 1127
Query: 466 tgatgatttanggataaacgaaatagacactgcatcgggaagtgaagacaatgaccatat 525
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1126 tgatgatttagggataaacgaaatagacactgcatcggaaagtgaagacaatgacaatat 1067
Query: 526 gaaccacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgagtagg 585
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 gaacaacgatgaaaatgataatgaaagtaatggatatgatagccagaaccagcgagtagg 1007
Query: 586 aaaaaaatacattaatgaccggagaactgatggtgaaatgatgcccgacaactcanatct 645
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1006 aaaaaaatacattaatgacgggagaactgatggtgaaatgatgcccgacaactcagatct 947
Query: 646 ctggggaactgaagatgagttcgatattgacacaactaatgacgttaatggattggacca 705
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ctgggaaactgaagatgagtcggatattgacacaactaatgacgttaatggattggacca 887
Query: 706 aatttagcctg-aaatatattagtttttgaggaagattactgggag 750
||| || ||| |||||||| |||||||||||| || |||||||||
Sbjct: 886 aatatacgctgaaaatatatcagtttttgaggagga-tactgggag 842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6952
Number of Sequences: 1807
Number of extensions: 6952
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)