BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD06FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1067 0.0
>3x_Contig1426
Length = 8319
Score = 1067 bits (538), Expect = 0.0
Identities = 564/573 (98%)
Strand = Plus / Minus
Query: 89 ccgctgtaccgaatttttgaacaatgtatttttccacaggaatgaagtagctgttaagct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccgctgtaccgaatttttgaacaatgtatttttccacaggaatgaagtagctgttaagct 517
Query: 149 ctttagcgggggtctcatctcctgtctgatctttcttatacgattcgagacattgaccaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctttagcgggggtctcatctcctgtctgatctttcttatacgattcgagacattgaccaa 457
Query: 209 ctatattgttaatcntttcaaggtccggcagtatcttgccctcagtatccctagaatttg 268
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctatattggataactgttcaaggtccggcagtatcttgccctcagtatccctagaatttg 397
Query: 269 ctgtttgtctcaaaacaacagtcacctcacatattgtacatttgaacttaactgcgtcta 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgtttgtctcaaaacaacagtcacctcacatattgtacatttgaacttaactgcgtcta 337
Query: 329 taggatgtcgtaacaaggttccgcaacatctacatcgagtttccctaaattttggcgggt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taggatgtcgtaacaaggttccgcaacatctacatcgagtttccctaaattttggcgggt 277
Query: 389 cttcacaatccaacctatccgaactttgatagcggatttttatcttttccctaccaacaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcacaatccaacctatccgaactttgatagcggatttttatcttttccctaccaacaa 217
Query: 449 tgtgtaatgggttaaacttgaacatattcgagcagctactgatggacagtcagacttctt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgtgtaatgggttaaacttgaacatattcgagcagctactgatggacagtcagacttctt 157
Query: 509 cctctaagttcatttcaacaaacttgtaaatttagggttggatagtcgaaagcacaaaag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cctctaagttcatttcaacaaacttgtaaatttagggttggatagtcgaaagcacaaaag 97
Query: 569 attgtgtcaaatttattacttttttttaccaactgacaatatcatctggaatacacaggc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 attgtgtcaaatttattacttttttttaccaactgacaatatcatctggaatacacaggc 37
Query: 629 ctgtaaccatttcttaatttgaacagacaaaaa 661
|||||||||||||||||||| | || |||||||
Sbjct: 36 ctgtaaccatttcttaatttaaccaaacaaaaa 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7624
Number of Sequences: 1807
Number of extensions: 7624
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)