BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD06RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 478 e-134
3x_Contig1426 204 2e-52
>3x_Contig1198
Length = 5263
Score = 478 bits (241), Expect = e-134
Identities = 263/269 (97%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 47 acatgagacaattgattaagggtgctaacgaagctaccaagactttgaaccgtggtattt 106
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4971 acatgagacaattgaagaagggtgctaacgaagctaccaagactttgaaccgtggtattt 5030
Query: 107 ccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcacttgccat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5031 ccgaattcattatcatggctgctgactgtgaacctattgaaatcttgttgcacttgccat 5090
Query: 167 tgttgtgtgaagataagaacgttccatacgtctttgttccatccagattttctttgggta 226
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 5091 tgttgtgtgaagataagaacgttccatacgtctttgttccatccagaactgctttgggta 5150
Query: 227 gagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgatgcttctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5151 gagcttgtggtgtttccagaccagttattgctgcttctattaccactaacgatgcttctg 5210
Query: 287 ctatcaaaagccaaatctatgccgttaag 315
|||||||||||||||||| ||||||||||
Sbjct: 5211 ctatcaaaagccaaatct-tgccgttaag 5238
>3x_Contig1426
Length = 8319
Score = 204 bits (103), Expect = 2e-52
Identities = 215/242 (88%), Gaps = 8/242 (3%)
Strand = Plus / Plus
Query: 612 tttttgtctgttcaaattaagatatg-ttacaggcctgtgttttc-agatgatattgtca 669
||||||| || | ||||||||| ||| |||||||||||||| ||| ||||||||||||||
Sbjct: 4 tttttgtttggttaaattaagaaatggttacaggcctgtgtattccagatgatattgtca 63
Query: 670 gntggttaaaaaaagtaataaatttgacacaatcttttgtgcttttgactattcaaccct 729
| |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 64 gttggtaaaaaaaagtaataaatttgacacaatcttttgtgctttcgactatccaaccc- 122
Query: 730 taattttacagttttgttgaattgaacttaaaaggaaggagttctgactgtccatcagta 789
||| |||||| ||||||||| ||||||| | |||||| || |||||||||||||||||
Sbjct: 123 taaatttacaagtttgttgaaatgaactt-agaggaagaag-tctgactgtccatcagt- 179
Query: 790 agctgctcgaatatgttcaagtttaaccccatttccctttggttggtagggaaaaaataa 849
|||||||||||||||||||||||||| |||||| | | || |||||||||||||| ||||
Sbjct: 180 agctgctcgaatatgttcaagtttaa-cccattacacatt-gttggtagggaaaagataa 237
Query: 850 aa 851
||
Sbjct: 238 aa 239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,200
Number of Sequences: 1807
Number of extensions: 10200
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)