BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD07FM1.SCF screened BAC_end
(810 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 309 5e-84
>3x_Contig1806
Length = 53694
Score = 309 bits (156), Expect = 5e-84
Identities = 239/262 (91%), Gaps = 5/262 (1%)
Strand = Plus / Minus
Query: 88 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38826 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 38767
Query: 148 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38766 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 38707
Query: 208 agaagtattggaaagtaattgctgcaagataaattcatgt-ggggaaaaaatagaaaaca 266
|||||||||||| | || ||||||||||||||||| || |||||||||||||||||||
Sbjct: 38706 agaagtattggattgaaaaagctgcaagataaattcaggtgggggaaaaaatagaaaaca 38647
Query: 267 gtttattgaaatncaaattattaagaatcattaaaaccttattaaaccttaaggttaaat 326
|||| |||||| || |||||||| ||| ||| | || ||||| | |||||||||||
Sbjct: 38646 gtttcatgaaatggcaaatattaagattca-taagaactcattaa--cctaaggttaaat 38590
Query: 327 ggccggcttttgtcaatccttt 348
|| ||||||||||||||||||
Sbjct: 38589 -gcgggcttttgtcaatccttt 38569
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,647
Number of Sequences: 1807
Number of extensions: 14647
Number of successful extensions: 270
Number of sequences better than 1.0e-20: 1
length of query: 810
length of database: 10,358,551
effective HSP length: 16
effective length of query: 794
effective length of database: 10,329,639
effective search space: 8201733366
effective search space used: 8201733366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)