BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD07RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1134 0.0
>3x_Contig1711
Length = 15491
Score = 1134 bits (572), Expect = 0.0
Identities = 649/668 (97%), Gaps = 5/668 (0%)
Strand = Plus / Minus
Query: 60 tatgctggcatgtatgtgagtaatcttggtcattttgaccaaagggagtttaatgcaata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9458 tatgctggcatgtatgtgagtaatcttggtcattttgaccaaagggagtttaatgcaata 9399
Query: 120 attggatgtcgttccatttaactttaaatactaattttgagaagatttatgccgatgaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9398 attggatgtcgttccatttaactttaaatactaattttgagaagatttatgccgatgaag 9339
Query: 180 agttgtccagagtggaatgctcatcccattccttagttactgctggtttgggacgactgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9338 agttgtccagagtggaatgctcatcccattccttagttactgctggtttgggacgactgt 9279
Query: 240 ttttgcggaaaaatttcgaccattctcttaccgctgttacgatggtgcagatgagacatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9278 ttttgcggaaaaatttcgaccattctcttaccgctgttacgatggtgcagatgagacatg 9219
Query: 300 tcgttgtaatgagcacgcatgcagttgaataaatcacactaacaactcggaaagctgaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9218 tcgttgtaatgagcacgcatgcagttgaataaatcacactaacaactcggaaagctgaca 9159
Query: 360 ttggaacatacggattaaattgaaggtacaattctttgcaaccaatggccatggttccca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9158 ttggaacatacggattaaattgaaggtacaattctttgcaaccaatggccatggttccca 9099
Query: 420 aggggaaagtcataccccaccatgttttctgatatctataaattttggtgtgtgatcttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9098 aggggaaagtcataccccaccatgttttctgatatctataaattttggtgtgtgatcttg 9039
Query: 480 aatacgtcaatattccaatcacacacaagaaggtgaaatagaatccggttgctagtaat- 538
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9038 aatacgtcaatattccaatcacacacaagaaggtgaaaaagaatccggttgctagtaata 8979
Query: 539 acatgg-aaaaataagtcc-aaaatcttgaaagaccattcaatagcaacctttgcgatgt 596
|||||| |||||||||||| ||||||| |||||||||| |||||||||||||||||||||
Sbjct: 8978 acatggaaaaaataagtccaaaaatctggaaagaccatccaatagcaacctttgcgatgt 8919
Query: 597 atccgtttaagtctatattgggatccacgggatagtagagatcgatgtttaa-ttcacat 655
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 8918 atccgtttaagtctatattgggatccacgggatagtagagatcgatgtataatttcacat 8859
Query: 656 ccgttggtaaccaaact-ttcccttggcacctttgcccaaagggacgagacaaagaaaca 714
|||||| |||||||||| | || | |||||||| ||||| || |||||||||||||||
Sbjct: 8858 ccgttgttaaccaaactataccataggcaccttgacccaagggaccgagacaaagaaaca 8799
Query: 715 atgagaag 722
| ||||||
Sbjct: 8798 aggagaag 8791
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7108
Number of Sequences: 1807
Number of extensions: 7108
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)