BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD08FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 1136 0.0
>3x_Contig1661
Length = 14612
Score = 1136 bits (573), Expect = 0.0
Identities = 668/697 (95%), Gaps = 2/697 (0%)
Strand = Plus / Plus
Query: 117 atacctaccataatccttgcggttcatgattctatggcagaaccttatcccatgtccttt 176
||||||||||||| |||| ||||||||| || ||||||||||| || |||| |||| ||
Sbjct: 4922 atacctaccataaaccttccggttcatggttatatggcagaacgtttccccaggtccgtt 4981
Query: 177 tgtcttatatatctgattcataatcatgaataataataatatttgtcttttataaaaacc 236
|||||||||||||||||||| |||||||||||||||||||| | | ||||||||||
Sbjct: 4982 tgtcttatatatctgattcagaatcatgaataataataataatatttggctataaaaacc 5041
Query: 237 ctggagaaatctaattcaagaaactaaggcaagaagaaactaccttttaacaagccaaga 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5042 ctcgagaaatctaattcaagaaactaaggcaagaagaaactaccttttaacaagccaaga 5101
Query: 297 gaataaaccaatgagataaccgagatagctgggacgtttgaagaatttcccttaattgat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5102 gaataaaccaatgagataaccgagatagctgggacgtttgaagaatttcccttaattgat 5161
Query: 357 ggatcccagaaactgacatttgtgacatttccacaagtgacgttggacatattattcagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5162 ggatcccagaaactgacatttgtgacatttccacaagtgacgttggacatattattcagt 5221
Query: 417 attcggtatgctatagactatataagagggctaattaatatgcgttagtagtgtgtaatt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5222 attcggtatgctatagactatataagagggctaattaatatgcgttagtagtgtgtaatt 5281
Query: 477 ccagttttgcaattgtccctttcagccggatctggggaaaggaagttttggggacaaaaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5282 ccagttttgcaattgtccctttcagccggatctggggaaaggaagttttggggacaaaaa 5341
Query: 537 aagcggttctaggcgcggttttccgtgtagtcagcaaaaaaatttgtgcagttatatcgg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5342 aagcggttctaggcgcggttttccgtgtagtcagcaaaaaaatttgtgcagttatatcgg 5401
Query: 597 tttatcgtagggagagtaaggacctgaaaggatttgtccggatgaaaggctaacggggag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5402 tttatcgtagggagagtaaggacctgaaaggatttgtccggatgaaaggctaacggggag 5461
Query: 657 aagtcacatgtcctaatggtgtatgggtggcgatgtttgcctgcttcttgcaa-ttcaca 715
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5462 aagtcacaagtccgaatggtgtatgggtggcgatgtttgcctgcttcttgcaatttcaca 5521
Query: 716 tgtgacagatatatgaatcatctggaccgttgctgaccaggatgatgactcgacgggggg 775
|||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 5522 tgtgacagatatatgagtcagctggacggttgctgacaaggatgatgactcgacgggggg 5581
Query: 776 ggcccccggaagggggagattccctgtactcacgtgg 812
|| | ||||||||||||||||| ||||| ||||||||
Sbjct: 5582 gg-cgccggaagggggagattcgctgtagtcacgtgg 5617
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 1807
Number of extensions: 6846
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)