BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD08RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig979 1007 0.0
>3x_Contig979
Length = 3913
Score = 1007 bits (508), Expect = 0.0
Identities = 619/648 (95%), Gaps = 6/648 (0%)
Strand = Plus / Plus
Query: 212 tttgtgccatatgctccacatatggtcgctacagggtcgtacgatggagtagttagattg 271
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 tttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagattg 62
Query: 272 tacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctgtg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctgtg 122
Query: 332 gaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttcaaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttcaaa 182
Query: 392 gtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacggtc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacggtc 242
Query: 452 acctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttgca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttgca 302
Query: 512 tcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaagttt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaagttt 362
Query: 572 ggctggaagtttagcaacgctgtgctaagttgtgcagtctcaccatgcgatgcgcaaggt 631
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 ggctggaagtttagcaacgctgtgctaagttgtgcagtctcaccaggcgatgcgcaaggt 422
Query: 632 aataaacattttcgtgcaagtttatcctcaggaattctagccatcaagacgaagaagatg 691
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 423 aataaacatttcgttgcaggtttatcctcaggaattctagccatcaagacgaagaagaag 482
Query: 692 tccaataagattaacctcgctgatgtctctgatttggaggatttaccatttc-acagcag 750
||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 483 tccaaaaagattaacctcgctgatgtctctgatttggaggatttaccattacaacagcaa 542
Query: 751 gag-agtctgcgaaatcc-acaa-ttcca-aaaatgatgagagggtcc-aatccagaggg 805
||| |||||||||||||| |||| ||||| | |||||||||||||||| ||| ||||||
Sbjct: 543 gagaagtctgcgaaatccaacaatttccagagaatgatgagagggtccgaatacagaggt 602
Query: 806 ggtcaagagcctttttcccacaacgattaggccaatcctcaacgtaag 853
| |||||||| | || ||||||||| || | |||||||| ||||||
Sbjct: 603 gatcaagagcatattatacacaacgataagccaaatcctcagcgtaag 650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5133
Number of Sequences: 1807
Number of extensions: 5133
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)