BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD10FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1243 0.0
>3x_Contig1787
Length = 34189
Score = 1243 bits (627), Expect = 0.0
Identities = 714/737 (96%), Gaps = 5/737 (0%)
Strand = Plus / Minus
Query: 178 agaaccctgcttcattcataccgttgcggatatccgcactttttttttcatcactcatct 237
|||||||||||||| | |||| ||| ||||||||||||| || | ||||||||||||
Sbjct: 25202 agaaccctgcttcagttatacagttacggatatccgcaccgttaaatccatcactcatct 25143
Query: 238 tgactgcagcttcaaagtcaaattctccagctttttttacattggatgtatgaatcttga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25142 tgactgcagcttcaaagtcaaattctccagctttttttacattggatgtatgaatcttga 25083
Query: 298 agatttctaatcttcctgcctcatttggtaaactgatttcgatttttctgtccaatctac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25082 agatttctaatcttcctgcctcatttggtaaactgatttcgatttttctgtccaatctac 25023
Query: 358 caggtcttagtaaagcaggatctaaagtgtcaggtctattcgtagccataataactttcg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25022 caggtcttagtaaagcaggatctaaagtgtcaggtctattcgtagccataataactttcg 24963
Query: 418 tttgtcctaagttgtcgaaaccatccatctgagttaatagttccatcaatgtacgttgaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24962 tttgtcctaagttgtcgaaaccatccatctgagttaatagttccatcaatgtacgttgaa 24903
Query: 478 tttcacgatctgctgaggtaccttcgctaaatctacgtccaccgatagcatctatttcgt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24902 tttcacgatctgctgaggtaccttcgctaaatctacgtccaccgatagcatctatttcgt 24843
Query: 538 ccataaagatgatacaaggttcatgttctttggcgtatgcaaacatttctctaatgatac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24842 ccataaagatgatacaaggttcatgttctttggcgtatgcaaacatttctctaatgatac 24783
Query: 598 gtgctgattcaccgatgtatttatctacaataccggatgctggggagaagataaagttgg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24782 gtgctgattcaccgatgtatttatctacaataccggatgctggggagaagataaagttgg 24723
Query: 658 caccgatagttgcagcaactgccttagccaataaagtcttaccagtaccaggaggaccat 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722 caccgatagttgcagcaactgccttagccaataaagtcttaccagtaccaggaggaccat 24663
Query: 718 atagtaacacacccttaggtggtttgattcccactctctcgaaaatttctgggttctnta 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24662 atagtaacacacccttaggtggtttgattcccactctctcgaaaatttctgggttcttta 24603
Query: 778 ntggaagctcaatgacttctctcaatcctctgatctgttccggaagaaccaccgatacaa 837
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
Sbjct: 24602 gtggaagctcaatgacttctctcaattctctgatctgttccgtaag-accaccgatacca 24544
Query: 838 tcaaaagaagattccaccttgnttcaaaagtggtcataatataaactaatggggtcagtt 897
||||||| ||||| ||||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct: 24543 tcaaaag-agatttcaccttg-ttcaaaagtggtcatattataaactaat-gggtcagtt 24487
Query: 898 tcctttaggtaaaattc 914
| || ||||||||||||
Sbjct: 24486 t-ctctaggtaaaattc 24471
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6264
Number of Sequences: 1807
Number of extensions: 6264
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)