BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD10RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 837 0.0
>3x_Contig1103
Length = 3850
Score = 837 bits (422), Expect = 0.0
Identities = 555/590 (94%), Gaps = 7/590 (1%)
Strand = Plus / Plus
Query: 145 cctaacacattgctggcactggtatttactccattttcatacgaactgtgtgtgcgcctg 204
||||||||||| |||||| ||||||||| ||||||| || || |||||||||| ||||||
Sbjct: 516 cctaacacattcctggca-tggtattta-tccatttccagacaaactgtgtgtacgcctg 573
Query: 205 gtgatttgaagcaattatatggtctagtatgtcaattctacttcaattgcacccgaacta 264
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 574 gtgatttgaagcaattatatggtctagtatgtcaattttacttcaattgcacccgaacta 633
Query: 265 atgttgtctttgatgagagctggtttgatgatcatatgaatttcatggtacaaatgctgc 324
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 634 atgttgtctttgatgagagctgttttgatgatcatatgaatttcatggtagaaatgctgc 693
Query: 325 ggtttattgatgatgatggcattgttaatgcgtactctctgtggctctcaaatataatga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggtttattgatgatgatggcattgttaatgcgtactctctgtggctctcaaatataatga 753
Query: 385 aaagtgatgcattcatctcatctttactcaatgatattagatctttggaagttatcgaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aaagtgatgcattcatctcatctttactcaatgatattagatctttggaagttatcgaca 813
Query: 445 aactactactgcggggaataattgcacagaaaactgagattgacttgctcgttgaagagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aactactactgcggggaataattgcacagaaaactgagattgacttgctcgttgaagagg 873
Query: 505 aagatgaggataaaaatctttctttcttagctactattcaactaaaaattttaaaacagt 564
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 874 aagatgaggataaaaatctttcttccttagctactattcaactaaaaatattaaaacagt 933
Query: 565 tagtaacacatgaatgcttcggggtctt-tttgaaaacctttccaaaagaatttggtttt 623
|||||||||||||||||||| ||||||| | |||||||||| | |||||||| |||||||
Sbjct: 934 tagtaacacatgaatgcttc-gggtcttatatgaaaaccttacgaaaagaatatggtttt 992
Query: 624 gctttcttttcacaaaatgtttcaagatttgcaccaatgttggtgaccagttcaaaaaga 683
|| |||||| |||||||| ||||||||| || |||||||||||||||||||| |||||
Sbjct: 993 gc-ttctttcaacaaaatg-ttcaagattgtca-caatgttggtgaccagttcagaaaga 1049
Query: 684 agggaccttttttagttggctggcattcttaactggacttttgatttttt 733
||||||||| | ||||| ||| ||||| | ||||||||||||| ||||
Sbjct: 1050 tgggacctttatcagttgactgcaattctaagctggacttttgatatttt 1099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,998
Number of Sequences: 1807
Number of extensions: 15998
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)