BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZD11FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1427                                                        1443   0.0  

>3x_Contig1427 
          Length = 10253

 Score = 1443 bits (728), Expect = 0.0
 Identities = 846/876 (96%), Gaps = 10/876 (1%)
 Strand = Plus / Plus

                                                                        
Query: 80   gctttaaattttgacatctttgtggatcctttcgttaatgagaattctcttgcacgtacc 139
            |||||||||||||||| |||||||||||||||| |||||||||||| | ||||| |||||
Sbjct: 5339 gctttaaattttgacaactttgtggatcctttcattaatgagaatttttttgcaagtacc 5398

                                                                        
Query: 140  aaagacgcccttcaagaattatggcccataataccaaggaatgctagtagtaaagtattc 199
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5399 aaagacgcccttcaagaattatggcccaaaataccaaggaatgctagtagtaaagtattc 5458

                                                                        
Query: 200  tgttggtcacatttagaatgcataattgaacaaccaatatacttctgttcgtgaacaaaa 259
            ||||||||| |  |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 5459 tgttggtcagaagtagaattca-aattgaacaaccaatatacttctgttcgtgaacaaaa 5517

                                                                        
Query: 260  agtagcgtctacaaacactaaaaatattcccattttgctaaatatttcctccaatgaatc 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 agtagcgtctacaaacactaaaaatattcccattttgctaaatatttcctccaatgaatc 5577

                                                                        
Query: 320  gcactcttcacatgtcagttccaaacgtgcggaggaatcttcatgtcatgacgatattgc 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gcactcttcacatgtcagttccaaacgtgcggaggaatcttcatgtcatgacgatattgc 5637

                                                                        
Query: 380  taatgaagcaattgctaggaaactggcaaaacgaaaaacatctgctattagaaagtcaac 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 taatgaagcaattgctaggaaactggcaaaacgaaaaacatctgctattagaaagtcaac 5697

                                                                        
Query: 440  atttcgcccgatgatcagacctagcgtaacacacgctaacatcaaggagagtttatctgc 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5698 atttcgcccgatgatcagacctagcgtaacacacgctaacatcaaggagagtttatctgc 5757

                                                                        
Query: 500  taaccaaattgaagaagttcagtataacgatccatttttctccaatccacttgattgtaa 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 taaccaaattgaagaagttcagtataacgatccatttttctccaatccacttgattgtaa 5817

                                                                        
Query: 560  aaggctacaaacggaaatggctggtcgagtgttcaagctatcaagtgatcatatcctctt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 aaggctacaaacggaaatggctggtcgagtgttcaagctatcaagtgatcatatcctctt 5877

                                                                        
Query: 620  taaaagaagcatccgtagtaacgatacaacagcaacattaacttcttcaggaagtgtata 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5878 taaaagaagcatccgtagtaacgatacaacagcaacattaacttcttcaggaagtgtata 5937

                                                                        
Query: 680  tgcaagaagcagatggaaatatataagaccaaagccgtcttttaaaagaatagccaatgc 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5938 tgcaagaagcagatggaaatatataagaccaaagccgtcttttaaaagaatagccaatgc 5997

                                                                        
Query: 740  gatgaagcctttcaaaggtaaattctcgatggtggaggggaaaacaccagaactaccatt 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5998 gatgaagcctttcaaaggtaaattctcgatggtggaggggaaaacaccagaactaccatt 6057

                                                                        
Query: 800  ncgatacaagtttcagaagcat-aaatag-aaaaaataat-acgcttctaatagaatgac 856
              ||||||||||  |||   || |||||| |||||||||| |||||||||||||||||||
Sbjct: 6058 cggatacaagttcaagagcaataaaatagaaaaaaataataacgcttctaatagaatgac 6117

                                                                        
Query: 857  c--attcaccatggaaa-tcacgtcaatactcgtgaaga-aagtttccagatc--taata 910
            |   ||||||||||||| ||||||||||||||||||||| |||||||||||||   ||||
Sbjct: 6118 ccatttcaccatggaaattcacgtcaatactcgtgaagataagtttccagatcctaaata 6177

                                                
Query: 911  tgatgctgncaggatgatattttggaaagtgcaaga 946
            |||||||| |||||||||||||||||||||||||||
Sbjct: 6178 tgatgctgtcaggatgatattttggaaagtgcaaga 6213


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7281
Number of Sequences: 1807
Number of extensions: 7281
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)