BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZD12RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1152 1344 0.0
>3x_Contig1152
Length = 5366
Score = 1344 bits (678), Expect = 0.0
Identities = 742/756 (98%), Gaps = 7/756 (0%)
Strand = Plus / Minus
Query: 50 ttagttcgttgaaacttattgtgtctgttgtcctttctgtcaatatctttaaaatttctc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4601 ttagttcgttgaaacttattgtgtctgttgtcctttctgtcaatatctttaaaatttctc 4542
Query: 110 tcgccaagtcttcaagcaattttctttgcacaaccgatttaccagtttgtacaaggttca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4541 tcgccaagtcttcaagcaattttctttgcacaaccgatttaccagtttgtacaaggttca 4482
Query: 170 tatcaattttaccagttttaggatccgtagcgtaatctttgatggcagactttatcagtc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4481 tatcaattttaccagttttaggatccgtagcgtaatctttgatggcagactttatcagtc 4422
Query: 230 tcactgcttcttccacatcttcaagttcaactctttcacttaacctcatcttagcatgag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4421 tcactgcttcttccacatcttcaagttcaactctttcacttaacctcatcttagcatgag 4362
Query: 290 cttctgaaagtctaatcatactttctaactgtcttgttgttgcggtaattcttttttcat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4361 cttctgaaagtctaatcatactttctaactgtcttgttgttgcggtaattcttttttcat 4302
Query: 350 ctgatctactgtcatcacccatctttctcataccgacatatgccctcacaagttcagtct 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 ctgatctactgtcatcacccatctttctcataccgacatatgccctcacaagttcagtct 4242
Query: 410 tggctgactcagttattaccgggtgaatgttttgttttgcatagttgatgtaggctgtca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tggctgactcagttattaccgggtgaatgttttgttttgcatagttgatgtaggctgtca 4182
Query: 470 agaattcaactggtagaatatcaccttgagatacagaatccggtctgtcttccaggtata 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 agaattcaactggtagaatatcaccttgagatacagaatccggtctgtcttccaggtata 4122
Query: 530 aactggttaaatgcttagcgagttcacgatcagacgcttcgttgaccttgtcaagcacta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 aactggttaaatgcttagcgagttcacgatcagacgcttcgttgaccttgtcaagcacta 4062
Query: 590 gataaacgagatcaaatcttgantataatggaggcggcatatcaatattttcagtcacag 649
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 4061 gataaacgagatcaaatcttgataataatggaggcggcaaatcaatattttcagtcacag 4002
Query: 650 gaagattatgattgtacctagagttgataggattggcactagccagaattgaagttctag 709
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4001 gaagattaggattgtacctagagttgataggattggcactagccagaattgaagttctag 3942
Query: 710 catttaaag-tgtaataatacctgcttttgc-atagagatag-ttgttgttccata--ct 764
||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||| |
Sbjct: 3941 catttaaagttgtaataatacctgcttttgcaatagagattgtttgttgttccataactt 3882
Query: 765 catgt-atactgatcta-ttttatcgttcatcttat 798
||||| ||||||||||| | ||||||||||||||||
Sbjct: 3881 catgtaatactgatctagtattatcgttcatcttat 3846
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6649
Number of Sequences: 1807
Number of extensions: 6649
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)