BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE01FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1534 0.0
>3x_Contig1687
Length = 12800
Score = 1534 bits (774), Expect = 0.0
Identities = 811/819 (99%), Gaps = 4/819 (0%)
Strand = Plus / Minus
Query: 87 ctgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4104 ctgagggaatcatcccatgagggcaagaaaagtaagacaaagagatcacataaagatgga 4045
Query: 147 aaagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4044 aaagatgagtacacgttgttcttggaaaagaagttgaaatatctagaaaaattagttgac 3985
Query: 207 atgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3984 atgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgctcat 3925
Query: 267 cttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3924 cttttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccacggcg 3865
Query: 327 gcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatggg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3864 gcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaatggg 3805
Query: 387 gcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3804 gcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacctccg 3745
Query: 447 cctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 cctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacgttct 3685
Query: 507 ggcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ggcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctgattct 3625
Query: 567 ctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagttcttg 3565
Query: 627 tcatatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacacctac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 tcatatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacacctac 3505
Query: 687 tttacaagacttcaattcanatatccacttctagatgaacaagagatttacactttccac 746
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 tttacaagacttcaattcaaatatccacttctagatgaacaagagatttacactttccac 3445
Query: 747 aatgattatattaataataatgttcactcatattcaatcaatgaatttcatttctnctgt 806
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 3444 aatgattatattaataataatgttcactcatattcaatcaatgaattccatttctcctgt 3385
Query: 807 ggtagaatgtggttagttttcagcatttcagcccatttacacaagaccactggnaaaata 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3384 ggtagaatgtggttagttttcagcatttcagcccatttacacaagaccactgg-aaaata 3326
Query: 867 ccaggggtttgcctncaaaatagatattttctcaactgc 905
||||||| |||||| | ||||||||| ||||||||||||
Sbjct: 3325 ccagggg-ttgcctcc-aaatagata-tttctcaactgc 3290
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6392
Number of Sequences: 1807
Number of extensions: 6392
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)