BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1367 1542 0.0
>3x_Contig1367
Length = 7312
Score = 1542 bits (778), Expect = 0.0
Identities = 828/840 (98%), Gaps = 4/840 (0%)
Strand = Plus / Minus
Query: 87 ctaagacagactttgaacattgacgagccacaagaagaagaagtagaggaaaaagaagag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 ctaagacagactttgaacattgacgagccacaagaagaagaagtagaggaaaaagaagag 1296
Query: 147 tatgtaatacaggacttattatacttgaagctagaggaagaccaagatcagaaatcctta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 tatgtaatacaggacttattatacttgaagctagaggaagaccaagatcagaaatcctta 1236
Query: 207 gaacaattgggatattatgaaactcaatgcagaaggtgtaccagatgcagatttgtcgca 266
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 gaacaattgggatataa-gaaactcaatgcagaaggtgtaccagatgcagatttgtcgca 1177
Query: 267 gcttctctcttatcaagactttcaaactatccctggaaatgaattgccggtgattcatga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1176 gcttctctcttatcaagactttcaaactatccctggaaatgaattgccggtgattcatga 1117
Query: 327 tcaattaatagatgccattgagactgtattgcttgatttggaaagtttacagaatgaaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 tcaattaatagatgccattgagactgtattgcttgatttggaaagtttacagaatgaaga 1057
Query: 387 acaggaactattaaaggataaggccacatatgaggaattgattacaaatttggtaggtca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 acaggaactattaaaggataaggccacatatgaggaattgattacaaatttggtaggtca 997
Query: 447 tactcaaagaatacgaagagaggaaattgcagaataccagagaaagcacaaatccaaatc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tactcaaagaatacgaagagaggaaattgcagaataccagagaaagcacaaatccaaatc 937
Query: 507 taaaaagaaattttaacgataactatcttcctgatgttatttacttctttgagaaatgtt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 taaaaagaaattttaacgataactatcttcctgatgttatttacttctttgagaaatgtt 877
Query: 567 aggaattgtatatatctatatctgtaatatatatatgtttaactttatcaacgaaggcgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 aggaattgtatatatctatatctgtaatatatatatgtttaactttatcaacgaaggcgt 817
Query: 627 tatcctttaatttagttgtatgatttgttatttgttttcagtttacagaaagaccaagtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tatcctttaatttagttgtatgatttgttatttgttttcagtttacagaaagaccaagtg 757
Query: 687 aaatgcctatactcttagttctaattctggtttcttcactaatctctttttcactccact 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 aaatgcctatactcttagttctaattctggtttcttcactaatctctttttcactccact 697
Query: 747 ttgntagtttctgtcaaatttggcagcttcgccatgatctctgcctaagg-atctggnag 805
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 696 ttgtaagtttctgtcaaatttggcag-ttcgccatgatctctgcctaaggaatctggaga 638
Query: 806 attcagcttgtaaattctgaccaacaggatttcagaagtgaatacttcttcaaagtagtc 865
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 637 tttcagcttgtaaattctgaccaacaagatttcagaagtgaatacttcttcaaagtagtc 578
Query: 866 aagagggccaacttcattgttagtgatcttttggttacgggtttctatcatgacctacac 925
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 577 aagagggccaacttcattgttagtgatcttttggttacggg-ttctatcatgacctacac 519
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9107
Number of Sequences: 1807
Number of extensions: 9107
Number of successful extensions: 150
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)