BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZE03RM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1305                                                        1249   0.0  

>3x_Contig1305 
          Length = 9229

 Score = 1249 bits (630), Expect = 0.0
 Identities = 691/702 (98%), Gaps = 7/702 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   cttcaaactaagtcacctagatccttatatattaaacacgagatgtctcaagcgctcgga 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1445 cttcaaactaagtcacctagatccttatatattaaacacgagatgtctcaagcgctcgga 1504

                                                                        
Query: 107  gcttacagaaacgggttgagagccgcccgcgttgcttttaaaggagacttgcgcatgcta 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1505 gcttacagaaacgggttgagagccgcccgcgttgcttttaaaggagacttgcgcatgcta 1564

                                                                        
Query: 167  atggcagcaagacaacagatgagagaaagcatggtcaatccaccaaatccagagcttcca 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1565 atggcagcaagacaacagatgagagaaagcatggtcaatccaccaaatccagagcttcca 1624

                                                                        
Query: 227  cctgatcaacagatcaagcttatgaacgatgttgcacagtttctaagacaaaatgtcgtt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1625 cctgatcaacagatcaagcttatgaacgatgttgcacagtttctaagacaaaatgtcgtt 1684

                                                                        
Query: 287  caaggtaagaggactaaggatgacaaatatcacttgaacatccataaggacactgaattg 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1685 caaggtaagaggactaaggatgacaaatatcacttgaacatccataaggacactgaattg 1744

                                                                        
Query: 347  ggtgacaacgaaactatcaagactactaaaaagacactggcggcccaaggtggcggttgt 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1745 ggtgacaacgaaactatcaagactactaaaaagacactggcggcccaaggtggcggttgt 1804

                                                                        
Query: 407  tgtggtggtggtgctggcttgtacaaataggcagctggaacagaatagcaaattatgagg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1805 tgtggtggtggtgctggcttgtacaaataggcagctggaacagaatagcaaattatgagg 1864

                                                                        
Query: 467  cagattgatgacctgtctttcccctgatttcgtcctttctgaagggactctattactcga 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1865 cagattgatgacctgtctttcccctgatttcgtcctttctgaagggactctattactcga 1924

                                                                        
Query: 527  ctactaactctggtgtctttgaccccagatgcgttttgcagtccctgatatggcgcattc 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 ctactaactctggtgtctttgaccccagatgcgttttgcagtccctgatatggcgcattc 1984

                                                                        
Query: 587  tgttacagtattttgcttatacacaatcattaatttacatcttcctttttcttttccttc 646
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1985 tgttacagtattttgcttatacacaatcattaatttacatctt-ctttttcttttccttc 2043

                                                                        
Query: 647  cccgtcagggtttcgtggaccaaatatggggaacttgatcatgtacataacgaaatattg 706
            ||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| || ||
Sbjct: 2044 cccgtca-ggtttcgtgaaccaaatat-gggaactttatcatgtacataacgaatta-tg 2100

                                                      
Query: 707  ttggtcaacgggtctcttataatttaaatcaaactctatttt 748
            ||||||||| |||||| ||| |||| ||||||||||||||||
Sbjct: 2101 ttggtcaac-ggtctc-tattattt-aatcaaactctatttt 2139


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)