BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE04FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1540 1501 0.0
>3x_Contig1540
Length = 9505
Score = 1501 bits (757), Expect = 0.0
Identities = 799/807 (99%), Gaps = 5/807 (0%)
Strand = Plus / Minus
Query: 88 cataggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cataggtcgacagctgcttcagtgtgaccacgtctggccagaacaccgccttctttggct 5245
Query: 148 cttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 cttaatggcaccacatgaccaggcttcaagtaatcaatagcggtagtagtcttgtcagca 5185
Query: 208 agtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 agtttggaacacgttaatgcacgatcatgtgctgaaatccctgttgtggttccgtgtgca 5125
Query: 268 taatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 taatcacaagtaatggtatatgcggttccatgtctgtcatctgcgtaactttcacacgaa 5065
Query: 328 agatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 agatctttcaaaagaggtagatctaaacgatctgcccattcgttggtcattggtgcacaa 5005
Query: 388 acatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 acatacccagaagaataacgtatcaagaaggccatttgttcggtggtgatcgcattagcc 4945
Query: 448 gcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaactta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 gcacagattaggtcaccttcgttctcacgtgactcgtcatccatcacaataacgaactta 4885
Query: 508 ttctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtatta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4884 ttctgtctgaacttttctatggctacttcgatatcggtgaatatcatttttattgtatta 4825
Query: 568 taacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggctta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824 taacttgctattggattaacctgattttaattgaagtgtaagataacaacgtttggctta 4765
Query: 628 actagtcttaaccgttcactttactgtgactatggaataaatagatatctcanaatagcc 687
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4764 actagtcttaaccgttcactttactgtgactatggaataaatagatatctcaaaatagcc 4705
Query: 688 tccgtacttccactggtatctttgaaagtgtncgatctcactgcttttatacacttaaac 747
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4704 tccgtacttccactggtatctttgaaagtgtccgatctcactgcttttatacacttaaac 4645
Query: 748 aatgaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccagtctt 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4644 aatgaaatacagtcataaacaagagtcataagtaaaccatttcaattctttaccagtctt 4585
Query: 808 actttcaaagtgtgttctaatttggcactctttncgaaatatcaacagattgggtttcat 867
|||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct: 4584 actttcaaagtgtg-tctaattttgcactcttt-cgaaatatcaacagatt-ggtttcat 4528
Query: 868 gtctttaaacccatnaatgactaagtc 894
| |||||||||||| ||||||||||||
Sbjct: 4527 g-ctttaaacccat-aatgactaagtc 4503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5229
Number of Sequences: 1807
Number of extensions: 5229
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)