BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZE04RM1.SCF screened BAC_end (973 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1027 1098 0.0 >3x_Contig1027 Length = 4522 Score = 1098 bits (554), Expect = 0.0 Identities = 629/646 (97%), Gaps = 6/646 (0%) Strand = Plus / Plus Query: 42 aagctttgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatag 101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1794 aagctttgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatag 1853 Query: 102 atactaacgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaa 161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1854 atactaacgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaa 1913 Query: 162 agaattccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactg 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1914 agaattccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactg 1973 Query: 222 gttctatctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaag 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1974 gttctatctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaag 2033 Query: 282 aattaatcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagt 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2034 aattaatcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagt 2093 Query: 342 tctctctagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtacta 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2094 tctctctagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtacta 2153 Query: 402 ctcctctatatgcagatgacattgctgacttgatcgtttatgccactttaagaaaaccta 461 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2154 ctcctctatatgcagatgacattgctgacttgatcgtttatgccacttcaagaaaaccta 2213 Query: 462 atactgtcatcgctgatgttttggtatttgcttccaaccaagcatcttcttaccacattt 521 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2214 atactgtcatcgctgatgttttggtatttgcttccaaccaagcatctccttaccacattt 2273 Query: 522 accgtggcgaatagat-atcacgtcagaagatgtgttcgtggaacacattttttaaaaaa 580 |||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||| Sbjct: 2274 accgtggcgaatagataatcacgtcagaagatgtgttcgt-gtacacatttttaaaaaaa 2332 Query: 581 cttatacgggtttacaattagtaacacatgtagcacattgtaattcaacagttttgatta 640 ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||| | Sbjct: 2333 cttatacaggtatacaattagtaacacatgtagcaca-tgtaatacaacagttttgataa 2391 Query: 641 ctggaatttggaccttttttgctggtaaagaataagcccaaacgcc 686 |||| || |||| || ||||||| ||||||| |||||||||||||| Sbjct: 2392 ctgg-atatgga-ctcttttgct-gtaaagattaagcccaaacgcc 2434 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,486 Number of Sequences: 1807 Number of extensions: 14486 Number of successful extensions: 195 Number of sequences better than 1.0e-20: 1 length of query: 973 length of database: 10,358,551 effective HSP length: 16 effective length of query: 957 effective length of database: 10,329,639 effective search space: 9885464523 effective search space used: 9885464523 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)