BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZE04RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1027                                                        1098   0.0  

>3x_Contig1027 
          Length = 4522

 Score = 1098 bits (554), Expect = 0.0
 Identities = 629/646 (97%), Gaps = 6/646 (0%)
 Strand = Plus / Plus

                                                                        
Query: 42   aagctttgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatag 101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1794 aagctttgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatag 1853

                                                                        
Query: 102  atactaacgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaa 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1854 atactaacgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaa 1913

                                                                        
Query: 162  agaattccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactg 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 agaattccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactg 1973

                                                                        
Query: 222  gttctatctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaag 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 gttctatctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaag 2033

                                                                        
Query: 282  aattaatcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagt 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 aattaatcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagt 2093

                                                                        
Query: 342  tctctctagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtacta 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 tctctctagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtacta 2153

                                                                        
Query: 402  ctcctctatatgcagatgacattgctgacttgatcgtttatgccactttaagaaaaccta 461
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2154 ctcctctatatgcagatgacattgctgacttgatcgtttatgccacttcaagaaaaccta 2213

                                                                        
Query: 462  atactgtcatcgctgatgttttggtatttgcttccaaccaagcatcttcttaccacattt 521
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2214 atactgtcatcgctgatgttttggtatttgcttccaaccaagcatctccttaccacattt 2273

                                                                        
Query: 522  accgtggcgaatagat-atcacgtcagaagatgtgttcgtggaacacattttttaaaaaa 580
            |||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||
Sbjct: 2274 accgtggcgaatagataatcacgtcagaagatgtgttcgt-gtacacatttttaaaaaaa 2332

                                                                        
Query: 581  cttatacgggtttacaattagtaacacatgtagcacattgtaattcaacagttttgatta 640
            ||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct: 2333 cttatacaggtatacaattagtaacacatgtagcaca-tgtaatacaacagttttgataa 2391

                                                          
Query: 641  ctggaatttggaccttttttgctggtaaagaataagcccaaacgcc 686
            |||| || |||| || ||||||| ||||||| ||||||||||||||
Sbjct: 2392 ctgg-atatgga-ctcttttgct-gtaaagattaagcccaaacgcc 2434


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,486
Number of Sequences: 1807
Number of extensions: 14486
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)