BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE06RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1279 0.0
>3x_Contig1789
Length = 30977
Score = 1279 bits (645), Expect = 0.0
Identities = 701/717 (97%), Gaps = 2/717 (0%)
Strand = Plus / Plus
Query: 48 ccttgacgcgttgaaagagcttttgaaccatgtgatgcatcagttgcaaagatcgaataa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21648 ccttgacgcgttgaaagagcttttgaaccatgtgatgcatcagttgcaaagatcgaataa 21707
Query: 108 cacaaacagttggaccaagttgaaaacgagcaaatttggcaataaattgctactatctgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21708 cacaaacagttggaccaagttgaaaacgagcaaatttggcaataaattgctactatctgg 21767
Query: 168 gttgatatctatcatgttccaattgcaacaacattcggaagtgatttcacttggtgccga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21768 gttgatatctatcatgttccaattgcaacaacattcggaagtgatttcacttggtgccga 21827
Query: 228 caacccattaagcgtacaaaatatacattggcaggagatcatttcattcgccatcgatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21828 caacccattaagcgtacaaaatatacattggcaggagatcatttcattcgccatcgatta 21887
Query: 288 ctggcatcaagaagtcatgcacggttgtaacaattcatcaaactcagtcctgtcccacat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21888 ctggcatcaagaagtcatgcacggttgtaacaattcatcaaactcagtcctgtcccacat 21947
Query: 348 agatgcggtggacgacgaaggaatcaaactgttgaggctagatgacgttcgctcgtgtaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21948 agatgcggtggacgacgaaggaatcaaactgttgaggctagatgacgttcgctcgtgtaa 22007
Query: 408 gattccagcctaccacatgacccaaattatactaagaatattccaatacgactattacat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22008 gattccagcctaccacatgacccaaattatactaagaatattccaatacgactattacat 22067
Query: 468 atatgtaggcgcaccttggagaatgaacgttcgtgctggcactgaagaatatgcattggt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22068 atatgtaggcgcaccttggagaatgaacgttcgtgctggcactgaagaatatgcattggt 22127
Query: 528 gagcgaaagaatcctaaaattcagtcaagacccgatgcaaagtggaaatgccattattta 587
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 22128 gagcgaaagaatcctaaaattcagtcaagacccgatgcaaggtggaatggccattattta 22187
Query: 588 tgcttatatgttcttattcgagatgttccacaacggagaagatatgtcatgtgacgtgaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22188 tgcttatatgttcttattcgagatgttccacaacggagaagatatgtcatgtgacgtgaa 22247
Query: 648 tctcgactattg-attactagaccaaacactttgg-attgaccacactcttaaattgggc 705
|||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||| |
Sbjct: 22248 tctcgactattgtatcactagaccaaacaccttggcattgaccacactcttaatttggtc 22307
Query: 706 ttaacaatactttctttacggcccagaaacccttatttgggacaacttccctgatgc 762
||| | |||| ||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 22308 ttacaattactctctatacggcccagaaacccatatttgggacaactcccctgatgc 22364
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8050
Number of Sequences: 1807
Number of extensions: 8050
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)