BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZE07FM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1584                                                        1479   0.0  

>3x_Contig1584 
          Length = 9710

 Score = 1479 bits (746), Expect = 0.0
 Identities = 793/804 (98%), Gaps = 4/804 (0%)
 Strand = Plus / Plus

                                                                        
Query: 84   aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 aacaaggaaaaaggccagccaggattcattctacgtgtgttcgcattcccagcgttgtta 4044

                                                                        
Query: 144  gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4045 gacaagacgttccttgcactcttgatgaccggtgatctcggggcgatgagaatcatgaga 4104

                                                                        
Query: 204  agctactatcttttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 263
            ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4105 agctactatcagttgttaagaggattcgcaagtgaaatgaaagatgaggtctggttccta 4164

                                                                        
Query: 264  gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 gaaggcatgactcaggtactaccacaggatgtcgatgaatacagtggtggtggtggtatg 4224

                                                                        
Query: 324  cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 cacatgatgttggatttcttaggcggagggttaccctccatgactacaaccaacttgacg 4284

                                                                        
Query: 384  gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 gattttggaattttctagatcaactattcgtaccttaaaaatggactttcagtatggaaa 4344

                                                                        
Query: 444  aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 aatcaaaaaaatcgaagagacgttaccactgcacaaaactagcatgagaaacctttaatt 4404

                                                                        
Query: 504  cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 cttgttcacaatatgaaattttcaacttttgcacttttacaaattgtaaatatgtatata 4464

                                                                        
Query: 564  tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 tatgcacatacatacccacacacagataggagtaaatatctttcacttgttttatgcatt 4524

                                                                        
Query: 624  ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaagc 683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 ttaatggcatatttattataaagtgttttcaagaattagtcgtaaagtgacattggaagc 4584

                                                                        
Query: 684  gagagatggtcgttcataatcctaacaattggcattgggtcgataagaactgtattgact 743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 gagagatggtcgttcataatcctaacaattggcattgggtcgataagaactgtattgact 4644

                                                                        
Query: 744  gggcaaagaaatacatccaag-aaaattggttggtttgactaccggagaatcaacanatg 802
            |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 4645 gggcaaagaaatacttccaagaaaaattggttggtttgactaccggagaatcaacagatg 4704

                                                                        
Query: 803  aactgtatgcagaaaattacaaagctatcatcatnagaaagtgattggcga-gtgaaccc 861
            |||||||||||| ||||||||||||||||||||| |||| |||||| |||| ||||||| 
Sbjct: 4705 aactgtatgcag-aaattacaaagctatcatcattagaaggtgatt-gcgaggtgaacca 4762

                                    
Query: 862  acggaagggtaaggtgatttcttt 885
            ||||||||||||||||||||||||
Sbjct: 4763 acggaagggtaaggtgatttcttt 4786


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7196
Number of Sequences: 1807
Number of extensions: 7196
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)