BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZE07RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1104 0.0
>3x_Contig1654
Length = 17174
Score = 1104 bits (557), Expect = 0.0
Identities = 663/693 (95%), Gaps = 4/693 (0%)
Strand = Plus / Minus
Query: 49 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 2707
Query: 109 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 2647
Query: 169 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatatatggtcccat 228
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2646 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 2587
Query: 229 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 2527
Query: 289 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 2467
Query: 349 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 2407
Query: 409 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 2347
Query: 469 acagctaacgacaaaaactccgggagagtatgcccagaagcatgctgaaaattgacgttc 528
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct: 2346 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 2287
Query: 529 gtttaaatcaacctgaaccgataaaaatag-ttaaaaacttgatacttaagtgtatacat 587
||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 2286 gttaaaatcaacctgaaccgat-aaaatagtttaaaaacttgatacttaagtgtatacat 2228
Query: 588 attttgggatccccacgcccacatttaaacacgccgcattaaacatgtagctgggtatta 647
|| | | ||| || |||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 2227 atatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatatta 2168
Query: 648 ttgaatcaatgggcctcctttaaatgaagctt-gtaccggtctaccgataacaattcatg 706
|||||||||||| | ||||||| ||| ||||| |||| | |||| ||||||||||||||
Sbjct: 2167 ttgaatcaatggtcttcctttagatg-agcttcgtactgctctagcgataacaattcatc 2109
Query: 707 ggattggaaatttggctaatcggtaattttaat 739
|||||| |||| || || |||| ||||||||||
Sbjct: 2108 ggattgtaaatctgcctcatcgttaattttaat 2076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6599
Number of Sequences: 1807
Number of extensions: 6599
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)